Results 1 - 20 of 170 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21723 | 5' | -56.8 | NC_004812.1 | + | 110454 | 0.66 | 0.87185 |
Target: 5'- gUACgCCCAcGGACAcaGCCUGCGgCUgCCg -3' miRNA: 3'- -AUG-GGGU-CCUGUacCGGAUGCaGA-GG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 102778 | 0.66 | 0.879039 |
Target: 5'- aGCCCCcccGCGUGGUCU-CGUCgCCg -3' miRNA: 3'- aUGGGGuccUGUACCGGAuGCAGaGG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 130253 | 0.66 | 0.854515 |
Target: 5'- cGCCCCGGGggcggcggcucggcGCcgGGCC-ACGgCUCg -3' miRNA: 3'- aUGGGGUCC--------------UGuaCCGGaUGCaGAGg -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 85254 | 0.66 | 0.864448 |
Target: 5'- --aCgCAGGACGagcUGGCCaGCGUCaCCg -3' miRNA: 3'- augGgGUCCUGU---ACCGGaUGCAGaGG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 74527 | 0.66 | 0.879039 |
Target: 5'- cGgCCCAGGGCGUcGGCgUuCaUCUCCc -3' miRNA: 3'- aUgGGGUCCUGUA-CCGgAuGcAGAGG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 107283 | 0.66 | 0.87185 |
Target: 5'- aGCCaCCAagcggucgguGGGCggGGCCUugGggcgUUCCg -3' miRNA: 3'- aUGG-GGU----------CCUGuaCCGGAugCa---GAGG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 155395 | 0.66 | 0.88601 |
Target: 5'- aACCCCgGGGGCcgGGCCgggccggGCGUg--- -3' miRNA: 3'- aUGGGG-UCCUGuaCCGGa------UGCAgagg -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 15384 | 0.66 | 0.879039 |
Target: 5'- -uCCCCAGGGaccuggcgacCGUGGCCggggcCGUCgagcgcgCCg -3' miRNA: 3'- auGGGGUCCU----------GUACCGGau---GCAGa------GG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 134840 | 0.66 | 0.864448 |
Target: 5'- cGCCCCGGGGgGUGGCgaccgacggcGCGUCg-- -3' miRNA: 3'- aUGGGGUCCUgUACCGga--------UGCAGagg -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 22908 | 0.66 | 0.864448 |
Target: 5'- gUGCgCgGGGGCGUGGCC-GCGcCcCCg -3' miRNA: 3'- -AUGgGgUCCUGUACCGGaUGCaGaGG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 96873 | 0.66 | 0.892758 |
Target: 5'- gGCCgCCAggagcuGGACGUGcuGCgCUACGUCgCCg -3' miRNA: 3'- aUGG-GGU------CCUGUAC--CG-GAUGCAGaGG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 136920 | 0.66 | 0.87185 |
Target: 5'- gGCCCgAGGccgACcgGGCCgcccuCGUCcCCg -3' miRNA: 3'- aUGGGgUCC---UGuaCCGGau---GCAGaGG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 28408 | 0.66 | 0.87185 |
Target: 5'- -uUCCCGGuACAccucGGCCcgcaggUGCGUCUCCg -3' miRNA: 3'- auGGGGUCcUGUa---CCGG------AUGCAGAGG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 31867 | 0.66 | 0.87185 |
Target: 5'- aGCCagCCGGGGCGgucucccccGGCCaGCGcCUCCc -3' miRNA: 3'- aUGG--GGUCCUGUa--------CCGGaUGCaGAGG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 109879 | 0.66 | 0.88601 |
Target: 5'- gACCU--GGACGUGGCuCUGCGggagCCg -3' miRNA: 3'- aUGGGguCCUGUACCG-GAUGCaga-GG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 120079 | 0.66 | 0.856838 |
Target: 5'- gACCCCGGG-CccGGCCcccgagcCGcCUCCg -3' miRNA: 3'- aUGGGGUCCuGuaCCGGau-----GCaGAGG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 124896 | 0.66 | 0.862187 |
Target: 5'- -cCCCCAGGACccccGGCCgggcggcgGCGggggcggcggcccaUCUCCc -3' miRNA: 3'- auGGGGUCCUGua--CCGGa-------UGC--------------AGAGG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 46937 | 0.66 | 0.88601 |
Target: 5'- -uCCCCAGGcCguGUGGCCcguccACGUagaUCCg -3' miRNA: 3'- auGGGGUCCuG--UACCGGa----UGCAg--AGG- -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 4745 | 0.66 | 0.854515 |
Target: 5'- cGCCCCGGGggcggcggcucggcGCcgGGCC-ACGgCUCg -3' miRNA: 3'- aUGGGGUCC--------------UGuaCCGGaUGCaGAGg -5' |
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21723 | 5' | -56.8 | NC_004812.1 | + | 113151 | 0.66 | 0.865198 |
Target: 5'- gGCUCCGGGGCGcgagggucggcggagGGCC-GCGUCgCCc -3' miRNA: 3'- aUGGGGUCCUGUa--------------CCGGaUGCAGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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