miRNA display CGI


Results 1 - 20 of 170 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21723 5' -56.8 NC_004812.1 + 138865 1.11 0.001851
Target:  5'- gUACCCCAGGACAUGGCCUACGUCUCCg -3'
miRNA:   3'- -AUGGGGUCCUGUACCGGAUGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 99120 0.81 0.186131
Target:  5'- gGCCggCCAGGACccgcagGUGGCCgaagACGUCUCCg -3'
miRNA:   3'- aUGG--GGUCCUG------UACCGGa---UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 144499 0.79 0.246084
Target:  5'- aACCCCcccgacgccggacacGGGaACAUGGCC-GCGUCUCCc -3'
miRNA:   3'- aUGGGG---------------UCC-UGUACCGGaUGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 75534 0.77 0.287636
Target:  5'- gGCCCCAGGcGCGUGGCCga-GUUcgUCCg -3'
miRNA:   3'- aUGGGGUCC-UGUACCGGaugCAG--AGG- -5'
21723 5' -56.8 NC_004812.1 + 107471 0.76 0.337527
Target:  5'- -uCCCCAGGGCccgcucggcgAUGGCC-ACGUcCUCCa -3'
miRNA:   3'- auGGGGUCCUG----------UACCGGaUGCA-GAGG- -5'
21723 5' -56.8 NC_004812.1 + 18632 0.76 0.368746
Target:  5'- cGCCCCA-GACGcGGCCgccccCGUCUCCg -3'
miRNA:   3'- aUGGGGUcCUGUaCCGGau---GCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 26056 0.76 0.368746
Target:  5'- cGCCCCGcagcagaccgcGGAgGUGGCuCUcgaACGUCUCCg -3'
miRNA:   3'- aUGGGGU-----------CCUgUACCG-GA---UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 71991 0.75 0.385082
Target:  5'- cGCCCCGGGGCuggGGCgCgguCGUCUCg -3'
miRNA:   3'- aUGGGGUCCUGua-CCG-Gau-GCAGAGg -5'
21723 5' -56.8 NC_004812.1 + 14565 0.74 0.427954
Target:  5'- aACUCCcgcaGGGGCA-GGCCcgcggGCGUCUCCa -3'
miRNA:   3'- aUGGGG----UCCUGUaCCGGa----UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 83371 0.74 0.451334
Target:  5'- gGCCCCAGGGCGgcggcgguccgcaGGCCggcCGcCUCCa -3'
miRNA:   3'- aUGGGGUCCUGUa------------CCGGau-GCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 41334 0.73 0.502004
Target:  5'- gGCCgCGGGAUGgagcUGGCCUACGcCUCa -3'
miRNA:   3'- aUGGgGUCCUGU----ACCGGAUGCaGAGg -5'
21723 5' -56.8 NC_004812.1 + 38328 0.73 0.511665
Target:  5'- cGCCCguGGGCGagccGGCgCUgccACGUCUCCa -3'
miRNA:   3'- aUGGGguCCUGUa---CCG-GA---UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 99715 0.73 0.519449
Target:  5'- cUGCgCCCAGGGC-UGGCCgcacaggcccggGCGUUUCUg -3'
miRNA:   3'- -AUG-GGGUCCUGuACCGGa-----------UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 62467 0.73 0.521402
Target:  5'- aACCCCAGcGCGgcGGCCUGCGUC-Ca -3'
miRNA:   3'- aUGGGGUCcUGUa-CCGGAUGCAGaGg -5'
21723 5' -56.8 NC_004812.1 + 53729 0.72 0.531211
Target:  5'- cGCCCCGcgcacGGACGUGaGCCUggGCGacgagCUCCg -3'
miRNA:   3'- aUGGGGU-----CCUGUAC-CGGA--UGCa----GAGG- -5'
21723 5' -56.8 NC_004812.1 + 139777 0.72 0.55102
Target:  5'- cGCCUaAGGGCGgcGGCCgcCGUCUCCu -3'
miRNA:   3'- aUGGGgUCCUGUa-CCGGauGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 132989 0.72 0.56101
Target:  5'- cGCCCgucuGGGCGcccGGCCacUGCGUCUCCg -3'
miRNA:   3'- aUGGGgu--CCUGUa--CCGG--AUGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 118206 0.72 0.56101
Target:  5'- aACCCCu--ACggGGCCUACGUCgCCg -3'
miRNA:   3'- aUGGGGuccUGuaCCGGAUGCAGaGG- -5'
21723 5' -56.8 NC_004812.1 + 43481 0.72 0.56101
Target:  5'- aGCCCCAGGuCGcGGC--GCGUCUCg -3'
miRNA:   3'- aUGGGGUCCuGUaCCGgaUGCAGAGg -5'
21723 5' -56.8 NC_004812.1 + 88122 0.72 0.56101
Target:  5'- aUGCCCaucCAGGACcUGGCCUACGcCaUCg -3'
miRNA:   3'- -AUGGG---GUCCUGuACCGGAUGCaG-AGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.