miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21723 5' -56.8 NC_004812.1 + 72925 0.7 0.652327
Target:  5'- gUGCagCAGGuCgGUGGCCcACGUCUCCa -3'
miRNA:   3'- -AUGggGUCCuG-UACCGGaUGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 11977 0.72 0.571049
Target:  5'- -uCCCCGGGACGcgaUGGCgcGCGUC-CCg -3'
miRNA:   3'- auGGGGUCCUGU---ACCGgaUGCAGaGG- -5'
21723 5' -56.8 NC_004812.1 + 129033 0.71 0.59125
Target:  5'- gGCCCCgGGGGCggGGCCgcgGCGcCgggCCg -3'
miRNA:   3'- aUGGGG-UCCUGuaCCGGa--UGCaGa--GG- -5'
21723 5' -56.8 NC_004812.1 + 53300 0.71 0.59125
Target:  5'- --aCCgAGGACGUGGUCUugauGCG-CUCCa -3'
miRNA:   3'- augGGgUCCUGUACCGGA----UGCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 56181 0.71 0.621754
Target:  5'- aGCCCgGGcGugGUGGCCUggaagACGUCgugggCCu -3'
miRNA:   3'- aUGGGgUC-CugUACCGGA-----UGCAGa----GG- -5'
21723 5' -56.8 NC_004812.1 + 109953 0.71 0.621754
Target:  5'- cGCCCUGGcGGcCGUGGCgCUGCuGUUUCCg -3'
miRNA:   3'- aUGGGGUC-CU-GUACCG-GAUG-CAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 38414 0.71 0.631947
Target:  5'- gGCCCCguAGGGguUGGCC-GCGUCgaCCg -3'
miRNA:   3'- aUGGGG--UCCUguACCGGaUGCAGa-GG- -5'
21723 5' -56.8 NC_004812.1 + 122093 0.7 0.642141
Target:  5'- aGCgCCGGGGCG-GGCCUGgGUCagggCCu -3'
miRNA:   3'- aUGgGGUCCUGUaCCGGAUgCAGa---GG- -5'
21723 5' -56.8 NC_004812.1 + 70974 0.7 0.642141
Target:  5'- cGCCCCGaGGCGUggGGCCggaACGcCUCCa -3'
miRNA:   3'- aUGGGGUcCUGUA--CCGGa--UGCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 88122 0.72 0.56101
Target:  5'- aUGCCCaucCAGGACcUGGCCUACGcCaUCg -3'
miRNA:   3'- -AUGGG---GUCCUGuACCGGAUGCaG-AGg -5'
21723 5' -56.8 NC_004812.1 + 43481 0.72 0.56101
Target:  5'- aGCCCCAGGuCGcGGC--GCGUCUCg -3'
miRNA:   3'- aUGGGGUCCuGUaCCGgaUGCAGAGg -5'
21723 5' -56.8 NC_004812.1 + 38328 0.73 0.511665
Target:  5'- cGCCCguGGGCGagccGGCgCUgccACGUCUCCa -3'
miRNA:   3'- aUGGGguCCUGUa---CCG-GA---UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 99120 0.81 0.186131
Target:  5'- gGCCggCCAGGACccgcagGUGGCCgaagACGUCUCCg -3'
miRNA:   3'- aUGG--GGUCCUG------UACCGGa---UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 107471 0.76 0.337527
Target:  5'- -uCCCCAGGGCccgcucggcgAUGGCC-ACGUcCUCCa -3'
miRNA:   3'- auGGGGUCCUG----------UACCGGaUGCA-GAGG- -5'
21723 5' -56.8 NC_004812.1 + 18632 0.76 0.368746
Target:  5'- cGCCCCA-GACGcGGCCgccccCGUCUCCg -3'
miRNA:   3'- aUGGGGUcCUGUaCCGGau---GCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 26056 0.76 0.368746
Target:  5'- cGCCCCGcagcagaccgcGGAgGUGGCuCUcgaACGUCUCCg -3'
miRNA:   3'- aUGGGGU-----------CCUgUACCG-GA---UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 71991 0.75 0.385082
Target:  5'- cGCCCCGGGGCuggGGCgCgguCGUCUCg -3'
miRNA:   3'- aUGGGGUCCUGua-CCG-Gau-GCAGAGg -5'
21723 5' -56.8 NC_004812.1 + 14565 0.74 0.427954
Target:  5'- aACUCCcgcaGGGGCA-GGCCcgcggGCGUCUCCa -3'
miRNA:   3'- aUGGGG----UCCUGUaCCGGa----UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 83371 0.74 0.451334
Target:  5'- gGCCCCAGGGCGgcggcgguccgcaGGCCggcCGcCUCCa -3'
miRNA:   3'- aUGGGGUCCUGUa------------CCGGau-GCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 41334 0.73 0.502004
Target:  5'- gGCCgCGGGAUGgagcUGGCCUACGcCUCa -3'
miRNA:   3'- aUGGgGUCCUGU----ACCGGAUGCaGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.