miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21723 5' -56.8 NC_004812.1 + 1797 0.67 0.84102
Target:  5'- cGCCCCGccgcaGCAUGGCggACGUCggggCCg -3'
miRNA:   3'- aUGGGGUcc---UGUACCGgaUGCAGa---GG- -5'
21723 5' -56.8 NC_004812.1 + 2095 0.68 0.789289
Target:  5'- -uCCUCGGGGCGgcccgGGCC-GCG-CUCCc -3'
miRNA:   3'- auGGGGUCCUGUa----CCGGaUGCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 2145 0.67 0.832825
Target:  5'- gGCCCCGcGGGCggGGCUcGCGgcggcggccacCUCCa -3'
miRNA:   3'- aUGGGGU-CCUGuaCCGGaUGCa----------GAGG- -5'
21723 5' -56.8 NC_004812.1 + 3525 0.71 0.59125
Target:  5'- gGCCCCgGGGGCggGGCCgcgGCGcCgggCCg -3'
miRNA:   3'- aUGGGG-UCCUGuaCCGGa--UGCaGa--GG- -5'
21723 5' -56.8 NC_004812.1 + 3804 0.67 0.824449
Target:  5'- gACCUCAGGcccgcGCccGGCCUGCGgCcCCg -3'
miRNA:   3'- aUGGGGUCC-----UGuaCCGGAUGCaGaGG- -5'
21723 5' -56.8 NC_004812.1 + 4745 0.66 0.854515
Target:  5'- cGCCCCGGGggcggcggcucggcGCcgGGCC-ACGgCUCg -3'
miRNA:   3'- aUGGGGUCC--------------UGuaCCGGaUGCaGAGg -5'
21723 5' -56.8 NC_004812.1 + 5138 0.66 0.856838
Target:  5'- cGCCCgGGGACGgcggcgucGGCCcGCGg-UCCg -3'
miRNA:   3'- aUGGGgUCCUGUa-------CCGGaUGCagAGG- -5'
21723 5' -56.8 NC_004812.1 + 5416 0.67 0.840209
Target:  5'- gGCCCCgcggacgacggcgGGGACAgcgcccgGGCC---GUCUCCu -3'
miRNA:   3'- aUGGGG-------------UCCUGUa------CCGGaugCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 5631 0.67 0.832825
Target:  5'- gGCUCgGGGGCcgGGCCcgGgGUCgCCg -3'
miRNA:   3'- aUGGGgUCCUGuaCCGGa-UgCAGaGG- -5'
21723 5' -56.8 NC_004812.1 + 5670 0.7 0.682756
Target:  5'- aGCCCgcaGGGGCAcggggGGCCggGgGUCUCCc -3'
miRNA:   3'- aUGGGg--UCCUGUa----CCGGa-UgCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 8018 0.67 0.815899
Target:  5'- gACCCCggGGGGCGcgGGCCg--GcCUCCg -3'
miRNA:   3'- aUGGGG--UCCUGUa-CCGGaugCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 10779 0.69 0.722704
Target:  5'- -uCCCCGGG-CccGGCCUuCG-CUCCg -3'
miRNA:   3'- auGGGGUCCuGuaCCGGAuGCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 11977 0.72 0.571049
Target:  5'- -uCCCCGGGACGcgaUGGCgcGCGUC-CCg -3'
miRNA:   3'- auGGGGUCCUGU---ACCGgaUGCAGaGG- -5'
21723 5' -56.8 NC_004812.1 + 12909 0.67 0.832825
Target:  5'- -cCCCCGGGGCGgcgcGGCgaGCG-CUCg -3'
miRNA:   3'- auGGGGUCCUGUa---CCGgaUGCaGAGg -5'
21723 5' -56.8 NC_004812.1 + 13288 0.69 0.71281
Target:  5'- gGCCUCGGcgcGGCggGGCgUccGCGUCUCCg -3'
miRNA:   3'- aUGGGGUC---CUGuaCCGgA--UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 14565 0.74 0.427954
Target:  5'- aACUCCcgcaGGGGCA-GGCCcgcggGCGUCUCCa -3'
miRNA:   3'- aUGGGG----UCCUGUaCCGGa----UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 14592 0.67 0.823601
Target:  5'- -cCUCCGGGGCcagcucgggccggGUGGCgUuggcCGUCUCCa -3'
miRNA:   3'- auGGGGUCCUG-------------UACCGgAu---GCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 15384 0.66 0.879039
Target:  5'- -uCCCCAGGGaccuggcgacCGUGGCCggggcCGUCgagcgcgCCg -3'
miRNA:   3'- auGGGGUCCU----------GUACCGGau---GCAGa------GG- -5'
21723 5' -56.8 NC_004812.1 + 15456 0.66 0.88601
Target:  5'- aACCgCGGcGauGCcgGGCCccaucGCGUCUCCg -3'
miRNA:   3'- aUGGgGUC-C--UGuaCCGGa----UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 16865 0.72 0.581132
Target:  5'- gGCCCCGGGACcggcGUGGCC--CGUCg-- -3'
miRNA:   3'- aUGGGGUCCUG----UACCGGauGCAGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.