miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21724 3' -62.4 NC_004812.1 + 54794 0.66 0.646423
Target:  5'- uGGuCGGGCCCCCCgGccGCGagccUGGGG-GCc -3'
miRNA:   3'- -UCuGCCUGGGGGGgC--UGC----ACUCCgCG- -5'
21724 3' -62.4 NC_004812.1 + 144633 0.66 0.656077
Target:  5'- cGGCGGaACCCCgCCCccgcgggacGACGagGAGG-GCg -3'
miRNA:   3'- uCUGCC-UGGGG-GGG---------CUGCa-CUCCgCG- -5'
21724 3' -62.4 NC_004812.1 + 100501 0.66 0.646423
Target:  5'- cAGGCGuACCgCagCGGCGUGuAGGCGCc -3'
miRNA:   3'- -UCUGCcUGGgGggGCUGCAC-UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 96507 0.66 0.646423
Target:  5'- cGGCGGACCCugCCCCGggcACccGGGGCu- -3'
miRNA:   3'- uCUGCCUGGG--GGGGC---UGcaCUCCGcg -5'
21724 3' -62.4 NC_004812.1 + 107052 0.66 0.636758
Target:  5'- -cGCGGAggcCCCCCCCaGCGaGAGGgGa -3'
miRNA:   3'- ucUGCCU---GGGGGGGcUGCaCUCCgCg -5'
21724 3' -62.4 NC_004812.1 + 127923 0.66 0.656077
Target:  5'- cGGCGcGGCCagCCCCCaGCGcGcgcAGGCGCg -3'
miRNA:   3'- uCUGC-CUGG--GGGGGcUGCaC---UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 83869 0.66 0.656077
Target:  5'- gGGGCGGcgcuGCCgCCCCGuccuccuuUGUGgaAGGCGUg -3'
miRNA:   3'- -UCUGCC----UGGgGGGGCu-------GCAC--UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 92143 0.66 0.636758
Target:  5'- --cCGGGCCagCCCCGugGgGAuuGGUGCg -3'
miRNA:   3'- ucuGCCUGGg-GGGGCugCaCU--CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 8373 0.66 0.656077
Target:  5'- cGGCGG-CCgCCggggCCCGGgGUccgGGGGCGCg -3'
miRNA:   3'- uCUGCCuGG-GG----GGGCUgCA---CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 96469 0.66 0.636758
Target:  5'- gGGGCcGACCcggCCCCCG-CG-GAGGaCGCc -3'
miRNA:   3'- -UCUGcCUGG---GGGGGCuGCaCUCC-GCG- -5'
21724 3' -62.4 NC_004812.1 + 125035 0.66 0.636758
Target:  5'- gGGACGcGCUCCCCUcGCGccgcccGGGCGCg -3'
miRNA:   3'- -UCUGCcUGGGGGGGcUGCac----UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 15127 0.66 0.656077
Target:  5'- cGGCGG-CgCCCCCGACGgcGAcGuCGCa -3'
miRNA:   3'- uCUGCCuGgGGGGGCUGCa-CUcC-GCG- -5'
21724 3' -62.4 NC_004812.1 + 136366 0.66 0.633858
Target:  5'- cGGCgGGACCCaagguCCCGGCGgccgcgcuagccguUGcGGGCGCc -3'
miRNA:   3'- uCUG-CCUGGGg----GGGCUGC--------------AC-UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 120176 0.66 0.654148
Target:  5'- uGGgGGGCCCCcggCCCGcCGUGucccugcugcgcGGCGCc -3'
miRNA:   3'- uCUgCCUGGGG---GGGCuGCACu-----------CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 84616 0.66 0.694452
Target:  5'- gAGACGaccgcGCCCcagCCCCGgggcGCGUGAgccucccgcGGCGCg -3'
miRNA:   3'- -UCUGCc----UGGG---GGGGC----UGCACU---------CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 20592 0.66 0.656077
Target:  5'- cGAUGG-CCCCgCgGGCG--GGGCGCc -3'
miRNA:   3'- uCUGCCuGGGGgGgCUGCacUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 67135 0.66 0.656077
Target:  5'- cGGAguacCGGACgaCCUCGGCccgGAGGCGCc -3'
miRNA:   3'- -UCU----GCCUGggGGGGCUGca-CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 50882 0.66 0.636758
Target:  5'- -cGCGGGCCacCCCCCGGCccgGUGuucGGgGCc -3'
miRNA:   3'- ucUGCCUGG--GGGGGCUG---CACu--CCgCG- -5'
21724 3' -62.4 NC_004812.1 + 70040 0.66 0.656077
Target:  5'- cAGGCGGggGCgCUCgCCGACcuGUGcaGGGCGCa -3'
miRNA:   3'- -UCUGCC--UGgGGG-GGCUG--CAC--UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 41862 0.66 0.646423
Target:  5'- cAGGCGcACCuCCCCCGGCucccGGCGUc -3'
miRNA:   3'- -UCUGCcUGG-GGGGGCUGcacuCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.