miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21724 3' -62.4 NC_004812.1 + 4 0.68 0.540973
Target:  5'- --cCGGGCCcuCCCCCGGCGgcgcGCGCg -3'
miRNA:   3'- ucuGCCUGG--GGGGGCUGCacucCGCG- -5'
21724 3' -62.4 NC_004812.1 + 1407 0.67 0.627091
Target:  5'- -cGCGG-CCCggCCCCGACGgcggccgcgggGAGGgGCc -3'
miRNA:   3'- ucUGCCuGGG--GGGGCUGCa----------CUCCgCG- -5'
21724 3' -62.4 NC_004812.1 + 1581 0.67 0.611632
Target:  5'- --cCGGGuCCCCCCCGcACGgcuccccgccuccGGGCGCc -3'
miRNA:   3'- ucuGCCU-GGGGGGGC-UGCac-----------UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 1815 0.66 0.665715
Target:  5'- cGGACgucgGGGCCgCCCCGuCGgggGAGGgGa -3'
miRNA:   3'- -UCUG----CCUGGgGGGGCuGCa--CUCCgCg -5'
21724 3' -62.4 NC_004812.1 + 1995 0.74 0.249363
Target:  5'- uGGCGGGUCCCgCCGGCGgucgcucGGGGCGCc -3'
miRNA:   3'- uCUGCCUGGGGgGGCUGCa------CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 2033 0.74 0.243757
Target:  5'- cGGCGGGCCUCggUCGGCGgcggGGGGCGCg -3'
miRNA:   3'- uCUGCCUGGGGg-GGCUGCa---CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 2347 0.67 0.627091
Target:  5'- aGGACGGggggcGCgUCCCCGcCGgagaGAGGCGg -3'
miRNA:   3'- -UCUGCC-----UGgGGGGGCuGCa---CUCCGCg -5'
21724 3' -62.4 NC_004812.1 + 2415 0.66 0.656077
Target:  5'- cGGCGcGGCCagCCCCCaGCGcGcgcAGGCGCg -3'
miRNA:   3'- uCUGC-CUGG--GGGGGcUGCaC---UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 3223 0.66 0.68491
Target:  5'- -cGCaGACCCCaccuuccaCCCGGCGcccgccaGGGGCGCc -3'
miRNA:   3'- ucUGcCUGGGG--------GGGCUGCa------CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 3507 0.66 0.675328
Target:  5'- -cGCGGGCCCggggccggcggCCCCGGgGgcGGGGcCGCg -3'
miRNA:   3'- ucUGCCUGGG-----------GGGGCUgCa-CUCC-GCG- -5'
21724 3' -62.4 NC_004812.1 + 4101 0.68 0.540973
Target:  5'- cGGCGGGgccguCCUCCCCGGCGcc-GGCGg -3'
miRNA:   3'- uCUGCCU-----GGGGGGGCUGCacuCCGCg -5'
21724 3' -62.4 NC_004812.1 + 4254 0.68 0.563663
Target:  5'- cGGCGGcGCCCgCCgcggCGGCGUucucgcgcgccagcaGGGGCGCg -3'
miRNA:   3'- uCUGCC-UGGGgGG----GCUGCA---------------CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 5026 0.66 0.68491
Target:  5'- gAGGCcGACgaCCCCgGGcCG-GGGGCGCg -3'
miRNA:   3'- -UCUGcCUGg-GGGGgCU-GCaCUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 5423 0.67 0.598134
Target:  5'- cGGGCcggGGGCCCCCCagaggGGCGgaaGAGGacuCGCg -3'
miRNA:   3'- -UCUG---CCUGGGGGGg----CUGCa--CUCC---GCG- -5'
21724 3' -62.4 NC_004812.1 + 5540 0.69 0.494783
Target:  5'- cGGGCcggGGGCCCCCCagaggGGCGgagGAGGacuCGCg -3'
miRNA:   3'- -UCUG---CCUGGGGGGg----CUGCa--CUCC---GCG- -5'
21724 3' -62.4 NC_004812.1 + 5602 0.71 0.392312
Target:  5'- gGGGCGGGgUCCCCCaGGgGgccgGAGGCGg -3'
miRNA:   3'- -UCUGCCUgGGGGGG-CUgCa---CUCCGCg -5'
21724 3' -62.4 NC_004812.1 + 5913 0.67 0.617426
Target:  5'- cGGGCGGagccgccgcgacGCCgCCCCGgaGCGcgGGGGCGa -3'
miRNA:   3'- -UCUGCC------------UGGgGGGGC--UGCa-CUCCGCg -5'
21724 3' -62.4 NC_004812.1 + 6837 0.67 0.617426
Target:  5'- gGGGCGGcgGCCCUCgCGGuCGgcGAGGCGg -3'
miRNA:   3'- -UCUGCC--UGGGGGgGCU-GCa-CUCCGCg -5'
21724 3' -62.4 NC_004812.1 + 7017 0.66 0.656077
Target:  5'- cGGCGGGucggcgcacauuUCCCCCgggGACGcGAGGgGCg -3'
miRNA:   3'- uCUGCCU------------GGGGGGg--CUGCaCUCCgCG- -5'
21724 3' -62.4 NC_004812.1 + 7568 0.66 0.673408
Target:  5'- gGGGCGGucccGCCCCCaCCGcCGgcauaaagccGGCGCc -3'
miRNA:   3'- -UCUGCC----UGGGGG-GGCuGCacu-------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.