miRNA display CGI


Results 1 - 20 of 434 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21724 3' -62.4 NC_004812.1 + 53792 0.74 0.266819
Target:  5'- gAGGCGcGCCgCCCCGugGaGAGGuCGCg -3'
miRNA:   3'- -UCUGCcUGGgGGGGCugCaCUCC-GCG- -5'
21724 3' -62.4 NC_004812.1 + 156136 0.76 0.193316
Target:  5'- uGACGGGCCgCgCgGACGcGGGGCGCg -3'
miRNA:   3'- uCUGCCUGGgGgGgCUGCaCUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 153630 0.76 0.202614
Target:  5'- uGGACcGGCCCgCCCGACGUcucGGCGCu -3'
miRNA:   3'- -UCUGcCUGGGgGGGCUGCAcu-CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 125495 0.75 0.217287
Target:  5'- gGGAgccuUGGGCCCCCCCuccccGCGUuuccGGGGCGCg -3'
miRNA:   3'- -UCU----GCCUGGGGGGGc----UGCA----CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 44107 0.75 0.222377
Target:  5'- uAGAacaGGGCCCgCCUGACGgccGGGGCGUc -3'
miRNA:   3'- -UCUg--CCUGGGgGGGCUGCa--CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 44561 0.75 0.232861
Target:  5'- cGGACGGGCCCuCCCCGAaaaucucGGCGUa -3'
miRNA:   3'- -UCUGCCUGGG-GGGGCUgcacu--CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 122439 0.75 0.238257
Target:  5'- cGGGCGGcguCUCCUCgGGCGgcgGGGGCGCg -3'
miRNA:   3'- -UCUGCCu--GGGGGGgCUGCa--CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 127542 0.74 0.243757
Target:  5'- cGGCGGGCCUCggUCGGCGgcggGGGGCGCg -3'
miRNA:   3'- uCUGCCUGGGGg-GGCUGCa---CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 71051 0.74 0.249363
Target:  5'- aGGGCGGccGCCCCUgCGGCGguucgGGcGGCGCg -3'
miRNA:   3'- -UCUGCC--UGGGGGgGCUGCa----CU-CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 127503 0.76 0.193316
Target:  5'- uGGGCGGGUCCCgCCGGCGgucgcucGGGGCGCc -3'
miRNA:   3'- -UCUGCCUGGGGgGGCUGCa------CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 106463 0.76 0.188808
Target:  5'- cGGACGGagccgggcGCCCCccacgcgaaCCCGugGcUGGGGCGCg -3'
miRNA:   3'- -UCUGCC--------UGGGG---------GGGCugC-ACUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 32146 0.76 0.188808
Target:  5'- cGGcCGGGCCCCCgCCG-CGgcGGGGCGCc -3'
miRNA:   3'- -UCuGCCUGGGGG-GGCuGCa-CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 117470 0.79 0.119268
Target:  5'- gGGGCGGACCCCcggCCCGGcCGccGGGCGCg -3'
miRNA:   3'- -UCUGCCUGGGG---GGGCU-GCacUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 112793 0.79 0.122242
Target:  5'- cGGCGG-CUCCCCCGucggGCGUGuGGGCGCg -3'
miRNA:   3'- uCUGCCuGGGGGGGC----UGCAC-UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 94804 0.77 0.163664
Target:  5'- -cGCGGGCCCCCgCGGCGguggcugGAGGUGUu -3'
miRNA:   3'- ucUGCCUGGGGGgGCUGCa------CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 44057 0.77 0.167635
Target:  5'- cGGACGGcgcGCCCCCCCGcuCGgcGGGCGCc -3'
miRNA:   3'- -UCUGCC---UGGGGGGGCu-GCacUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 110092 0.77 0.171692
Target:  5'- gAGGCcccguGGGCCCCCCCGg---GGGGCGCg -3'
miRNA:   3'- -UCUG-----CCUGGGGGGGCugcaCUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 117970 0.76 0.184393
Target:  5'- gAGGCGGGCgCCCCCGGCcucgcccGGCGCg -3'
miRNA:   3'- -UCUGCCUGgGGGGGCUGcacu---CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 101521 0.76 0.184393
Target:  5'- cGuCGGGCCCCCCC-AUGUGcaugucgcccacGGGCGCg -3'
miRNA:   3'- uCuGCCUGGGGGGGcUGCAC------------UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 101047 0.76 0.184393
Target:  5'- -cGCGGGCCagcagggCCCCGguggccacguACGUGAGGCGCg -3'
miRNA:   3'- ucUGCCUGGg------GGGGC----------UGCACUCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.