miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21724 3' -62.4 NC_004812.1 + 141308 1.11 0.000698
Target:  5'- aAGACGGACCCCCCCGACGUGAGGCGCg -3'
miRNA:   3'- -UCUGCCUGGGGGGGCUGCACUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 103290 0.83 0.070525
Target:  5'- -cGCcGACCCCCCCGACGUGGaGCGCa -3'
miRNA:   3'- ucUGcCUGGGGGGGCUGCACUcCGCG- -5'
21724 3' -62.4 NC_004812.1 + 84113 0.8 0.108036
Target:  5'- cGGCGGcGCgCCCCCCGACcccGAGGCGCc -3'
miRNA:   3'- uCUGCC-UG-GGGGGGCUGca-CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 77151 0.8 0.110747
Target:  5'- cGGGCGGGCCCCCgCCGccGCGcgGAaGGCGCc -3'
miRNA:   3'- -UCUGCCUGGGGG-GGC--UGCa-CU-CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 75919 0.79 0.113522
Target:  5'- cGGGcCGGACCCCCCCaggGACcugGAGGUGCg -3'
miRNA:   3'- -UCU-GCCUGGGGGGG---CUGca-CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 50369 0.79 0.116362
Target:  5'- ---aGGGCgCCCCCGACGccgGGGGCGCg -3'
miRNA:   3'- ucugCCUGgGGGGGCUGCa--CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 78406 0.79 0.116362
Target:  5'- cGACGcgcauGACCCUCgCCGACGUGGcGGCGCa -3'
miRNA:   3'- uCUGC-----CUGGGGG-GGCUGCACU-CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 148371 0.79 0.119268
Target:  5'- gGGGCGGACCCCcggCCCGGcCGccGGGCGCg -3'
miRNA:   3'- -UCUGCCUGGGG---GGGCU-GCacUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 117470 0.79 0.119268
Target:  5'- gGGGCGGACCCCcggCCCGGcCGccGGGCGCg -3'
miRNA:   3'- -UCUGCCUGGGG---GGGCU-GCacUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 112793 0.79 0.122242
Target:  5'- cGGCGG-CUCCCCCGucggGCGUGuGGGCGCg -3'
miRNA:   3'- uCUGCCuGGGGGGGC----UGCAC-UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 71533 0.79 0.125284
Target:  5'- cGGCGG-CCUCCCUGGCGUcguacgccGGGGCGCa -3'
miRNA:   3'- uCUGCCuGGGGGGGCUGCA--------CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 134063 0.78 0.152255
Target:  5'- cGACGGGCCggugucguUUCCCGACGcgGGGGCGCc -3'
miRNA:   3'- uCUGCCUGG--------GGGGGCUGCa-CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 95175 0.77 0.155976
Target:  5'- cGGCGGGCCCUCa-GACGgccGGGGCGCg -3'
miRNA:   3'- uCUGCCUGGGGGggCUGCa--CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 94804 0.77 0.163664
Target:  5'- -cGCGGGCCCCCgCGGCGguggcugGAGGUGUu -3'
miRNA:   3'- ucUGCCUGGGGGgGCUGCa------CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 44057 0.77 0.167635
Target:  5'- cGGACGGcgcGCCCCCCCGcuCGgcGGGCGCc -3'
miRNA:   3'- -UCUGCC---UGGGGGGGCu-GCacUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 110092 0.77 0.171692
Target:  5'- gAGGCcccguGGGCCCCCCCGg---GGGGCGCg -3'
miRNA:   3'- -UCUG-----CCUGGGGGGGCugcaCUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 101047 0.76 0.184393
Target:  5'- -cGCGGGCCagcagggCCCCGguggccacguACGUGAGGCGCg -3'
miRNA:   3'- ucUGCCUGGg------GGGGC----------UGCACUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 101521 0.76 0.184393
Target:  5'- cGuCGGGCCCCCCC-AUGUGcaugucgcccacGGGCGCg -3'
miRNA:   3'- uCuGCCUGGGGGGGcUGCAC------------UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 117970 0.76 0.184393
Target:  5'- gAGGCGGGCgCCCCCGGCcucgcccGGCGCg -3'
miRNA:   3'- -UCUGCCUGgGGGGGCUGcacu---CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 65470 0.76 0.184393
Target:  5'- cGGCuGGACCCCCCCGGgccGAGcGCGCg -3'
miRNA:   3'- uCUG-CCUGGGGGGGCUgcaCUC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.