miRNA display CGI


Results 1 - 20 of 618 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21725 3' -62.6 NC_004812.1 + 140161 0.65 0.657772
Target:  5'- gGCCccGCUggaguaaaagauggCCGUCuCGCGGCCcugguuguuggugUGCCGCg -3'
miRNA:   3'- gCGGa-CGG--------------GGCAG-GCGUUGG-------------ACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 25482 0.65 0.657772
Target:  5'- uGCCgcgGCCCCGguucuacuacgaCGCGGCCUcgcaggaccccGCCGa -3'
miRNA:   3'- gCGGa--CGGGGCag----------GCGUUGGA-----------CGGCg -5'
21725 3' -62.6 NC_004812.1 + 150990 0.65 0.657772
Target:  5'- uGCCgcgGCCCCGguucuacuacgaCGCGGCCUcgcaggaccccGCCGa -3'
miRNA:   3'- gCGGa--CGGGGCag----------GCGUUGGA-----------CGGCg -5'
21725 3' -62.6 NC_004812.1 + 119200 0.66 0.621708
Target:  5'- -cCCUGCUCCuggugguGUCCGCGgcccccccuuGCCUGuacCCGCa -3'
miRNA:   3'- gcGGACGGGG-------CAGGCGU----------UGGAC---GGCG- -5'
21725 3' -62.6 NC_004812.1 + 120181 0.66 0.622682
Target:  5'- gGCCcccGgCCCG-CCGUGucCCUGCUGCg -3'
miRNA:   3'- gCGGa--CgGGGCaGGCGUu-GGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 56264 0.66 0.612937
Target:  5'- gCGCCccugcGCCUCGcCCGCGGCg-GcCCGCu -3'
miRNA:   3'- -GCGGa----CGGGGCaGGCGUUGgaC-GGCG- -5'
21725 3' -62.6 NC_004812.1 + 119123 0.66 0.622682
Target:  5'- cCGCCucUGUUUCGcCCGCAgacGCCcGCCGUu -3'
miRNA:   3'- -GCGG--ACGGGGCaGGCGU---UGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 124025 0.66 0.603205
Target:  5'- gGCaucCCCCG-CCGCGGgCggGCCGCg -3'
miRNA:   3'- gCGgacGGGGCaGGCGUUgGa-CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 152411 0.66 0.612937
Target:  5'- cCGCCgcgGuCCCCG-CCGUucccGCCggguacggcGCCGCg -3'
miRNA:   3'- -GCGGa--C-GGGGCaGGCGu---UGGa--------CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 50201 0.66 0.622682
Target:  5'- gCGCCgcgGCCCCccgcuGUCgCGCGAggagcgaCUGCUGUa -3'
miRNA:   3'- -GCGGa--CGGGG-----CAG-GCGUUg------GACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 23526 0.66 0.622682
Target:  5'- uGCUgggGCCCCacGUCgGCGccaucGCC-GCCGCc -3'
miRNA:   3'- gCGGa--CGGGG--CAGgCGU-----UGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 23417 0.66 0.603205
Target:  5'- cCGCUguccGCCCCuggcGUCCuggugugccugGCGGCCgcguuUGCCGCg -3'
miRNA:   3'- -GCGGa---CGGGG----CAGG-----------CGUUGG-----ACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 124591 0.66 0.612937
Target:  5'- uGCgauggGCCCCGgcgaaGCGACCcggGCCGCc -3'
miRNA:   3'- gCGga---CGGGGCagg--CGUUGGa--CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 153160 0.66 0.612937
Target:  5'- cCGCCgGgCCCGacccCCGCGgcggcuggcgccGCgUGCCGCc -3'
miRNA:   3'- -GCGGaCgGGGCa---GGCGU------------UGgACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 141402 0.66 0.612937
Target:  5'- aCGCC-GUgCUGgagCGC-GCCUGCCGCa -3'
miRNA:   3'- -GCGGaCGgGGCag-GCGuUGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 282 0.66 0.622682
Target:  5'- gCGCgC-GCUCCG-CCGCcguCCgGCCGCg -3'
miRNA:   3'- -GCG-GaCGGGGCaGGCGuu-GGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 56056 0.66 0.603205
Target:  5'- cCGCC-GUCUCGUgCCGgAGCUcgcGCCGCg -3'
miRNA:   3'- -GCGGaCGGGGCA-GGCgUUGGa--CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 80388 0.66 0.612937
Target:  5'- cCGCCcGCCCCcccuUCCGCGcggUCUGCC-Ca -3'
miRNA:   3'- -GCGGaCGGGGc---AGGCGUu--GGACGGcG- -5'
21725 3' -62.6 NC_004812.1 + 44016 0.66 0.622682
Target:  5'- gGCCagcaggagGCUCCGgcggCCGCGcgucACCUGCgCGUc -3'
miRNA:   3'- gCGGa-------CGGGGCa---GGCGU----UGGACG-GCG- -5'
21725 3' -62.6 NC_004812.1 + 100172 0.66 0.612937
Target:  5'- gCGCC-GCCagGcCCGCcGCCcGCCGCc -3'
miRNA:   3'- -GCGGaCGGggCaGGCGuUGGaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.