miRNA display CGI


Results 1 - 20 of 618 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21725 3' -62.6 NC_004812.1 + 141603 1.11 0.000567
Target:  5'- gCGCCUGCCCCGUCCGCAACCUGCCGCg -3'
miRNA:   3'- -GCGGACGGGGCAGGCGUUGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 153108 0.83 0.059985
Target:  5'- cCGCCgGCCCCGggcccgcgcCCGCGGCCcGCCGCg -3'
miRNA:   3'- -GCGGaCGGGGCa--------GGCGUUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 27600 0.83 0.059985
Target:  5'- cCGCCgGCCCCGggcccgcgcCCGCGGCCcGCCGCg -3'
miRNA:   3'- -GCGGaCGGGGCa--------GGCGUUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 124605 0.83 0.061546
Target:  5'- gGCCgguucgGCCCCGccUCCGUggcgGACCUGCCGCg -3'
miRNA:   3'- gCGGa-----CGGGGC--AGGCG----UUGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 151582 0.83 0.061546
Target:  5'- gGCgCUGCCCCGccugCCGCcccACCUGCCGCc -3'
miRNA:   3'- gCG-GACGGGGCa---GGCGu--UGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 120681 0.83 0.061546
Target:  5'- gGCgCUGCCCCGccugCCGCcccACCUGCCGCc -3'
miRNA:   3'- gCG-GACGGGGCa---GGCGu--UGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 131928 0.81 0.07947
Target:  5'- gGCCUcGCgggauCCCGUgCCGCGACCUGCUGCu -3'
miRNA:   3'- gCGGA-CG-----GGGCA-GGCGUUGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 119791 0.79 0.102323
Target:  5'- gGCCUGCCCCGgggucuGCCUGCCGCc -3'
miRNA:   3'- gCGGACGGGGCaggcguUGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 46116 0.79 0.103355
Target:  5'- aCGCCaGCCCCucGUCCGUGACCUucgcgaaguacggcaGCCGCa -3'
miRNA:   3'- -GCGGaCGGGG--CAGGCGUUGGA---------------CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 58178 0.79 0.107584
Target:  5'- gCGCCUGCCgCC--CCGCGGCC-GCCGCa -3'
miRNA:   3'- -GCGGACGG-GGcaGGCGUUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 155 0.79 0.115953
Target:  5'- gCGCC-GCCgCGcCCGCGGCCcGCCGCg -3'
miRNA:   3'- -GCGGaCGGgGCaGGCGUUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 125664 0.79 0.115953
Target:  5'- gCGCC-GCCgCGcCCGCGGCCcGCCGCg -3'
miRNA:   3'- -GCGGaCGGgGCaGGCGUUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 156565 0.79 0.115953
Target:  5'- gCGCC-GCCgCGcCCGCGGCCcGCCGCg -3'
miRNA:   3'- -GCGGaCGGgGCaGGCGUUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 152570 0.79 0.117114
Target:  5'- aCGCCgcgGCCgCCG-CCGCcgccgagugccucacGGCCUGCCGCg -3'
miRNA:   3'- -GCGGa--CGG-GGCaGGCG---------------UUGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 27061 0.79 0.117114
Target:  5'- aCGCCgcgGCCgCCG-CCGCcgccgagugccucacGGCCUGCCGCg -3'
miRNA:   3'- -GCGGa--CGG-GGCaGGCG---------------UUGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 83366 0.78 0.118876
Target:  5'- gCGCCgGCCCCagggcggcggcgGUCCGCAgGCCgGCCGCc -3'
miRNA:   3'- -GCGGaCGGGG------------CAGGCGU-UGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 53363 0.78 0.118876
Target:  5'- gCGCCUGCgCgagaucaacuaCGUCCGCGagcgccugaACCUGCCGCu -3'
miRNA:   3'- -GCGGACGgG-----------GCAGGCGU---------UGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 48779 0.78 0.128059
Target:  5'- gCGCCUGCCCCGcuaccUCGCgAACCUGaCGCg -3'
miRNA:   3'- -GCGGACGGGGCa----GGCG-UUGGACgGCG- -5'
21725 3' -62.6 NC_004812.1 + 136174 0.78 0.13355
Target:  5'- gGCCUGCUggacgcgcaccacaUCGaCCGCAgcGCCUGCCGCa -3'
miRNA:   3'- gCGGACGG--------------GGCaGGCGU--UGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 75166 0.77 0.137894
Target:  5'- gGCUcucgGCCUCGcUCCGC-GCCUGCCGCu -3'
miRNA:   3'- gCGGa---CGGGGC-AGGCGuUGGACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.