miRNA display CGI


Results 1 - 20 of 618 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21725 3' -62.6 NC_004812.1 + 131533 0.76 0.175866
Target:  5'- gCGCC-GCCCCGUCgaGgAGCCcGCCGCc -3'
miRNA:   3'- -GCGGaCGGGGCAGg-CgUUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 119519 0.77 0.152087
Target:  5'- cCGCCgggcGCCCCGggccUCCGCGACCcaacccccGCCGCc -3'
miRNA:   3'- -GCGGa---CGGGGC----AGGCGUUGGa-------CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 94595 0.77 0.155837
Target:  5'- gGCC-GCCUCG-CCGCGGCCUGucCCGCg -3'
miRNA:   3'- gCGGaCGGGGCaGGCGUUGGAC--GGCG- -5'
21725 3' -62.6 NC_004812.1 + 152694 0.77 0.155837
Target:  5'- gCGCCgcgcgGCCCCG-CCGCcgcGCC-GCCGCg -3'
miRNA:   3'- -GCGGa----CGGGGCaGGCGu--UGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 67327 0.76 0.163588
Target:  5'- aCGCCgggGCUCCGcgccgcgCCGCGGCCUGCgCGUc -3'
miRNA:   3'- -GCGGa--CGGGGCa------GGCGUUGGACG-GCG- -5'
21725 3' -62.6 NC_004812.1 + 551 0.76 0.163588
Target:  5'- cCGCCUcccGCCCCGgcgCgCGCGGCCgcguggaGCCGCg -3'
miRNA:   3'- -GCGGA---CGGGGCa--G-GCGUUGGa------CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 153033 0.76 0.163588
Target:  5'- cCGCCcGCCgCCG-CCGCcGCCUGcCCGCc -3'
miRNA:   3'- -GCGGaCGG-GGCaGGCGuUGGAC-GGCG- -5'
21725 3' -62.6 NC_004812.1 + 74261 0.76 0.175866
Target:  5'- aCGCCUcGCCCCGgCCGCGcACC-GuCCGCg -3'
miRNA:   3'- -GCGGA-CGGGGCaGGCGU-UGGaC-GGCG- -5'
21725 3' -62.6 NC_004812.1 + 153725 0.76 0.175866
Target:  5'- gGCCUGCUcgCCG-CCGCcGCCgGCCGCc -3'
miRNA:   3'- gCGGACGG--GGCaGGCGuUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 47515 0.77 0.152087
Target:  5'- uCGCC-GCCaCCGUCCGCAcgcuccaggGCCUGUCGa -3'
miRNA:   3'- -GCGGaCGG-GGCAGGCGU---------UGGACGGCg -5'
21725 3' -62.6 NC_004812.1 + 125200 0.77 0.152087
Target:  5'- gGCCcGCCCCGgCCGCGGCg-GCCGUg -3'
miRNA:   3'- gCGGaCGGGGCaGGCGUUGgaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 21381 0.77 0.141324
Target:  5'- gCGCgaGCUCCGcgCCGCGGCCgucucGCCGCg -3'
miRNA:   3'- -GCGgaCGGGGCa-GGCGUUGGa----CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 153108 0.83 0.059985
Target:  5'- cCGCCgGCCCCGggcccgcgcCCGCGGCCcGCCGCg -3'
miRNA:   3'- -GCGGaCGGGGCa--------GGCGUUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 120681 0.83 0.061546
Target:  5'- gGCgCUGCCCCGccugCCGCcccACCUGCCGCc -3'
miRNA:   3'- gCG-GACGGGGCa---GGCGu--UGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 119791 0.79 0.102323
Target:  5'- gGCCUGCCCCGgggucuGCCUGCCGCc -3'
miRNA:   3'- gCGGACGGGGCaggcguUGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 125664 0.79 0.115953
Target:  5'- gCGCC-GCCgCGcCCGCGGCCcGCCGCg -3'
miRNA:   3'- -GCGGaCGGgGCaGGCGUUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 152570 0.79 0.117114
Target:  5'- aCGCCgcgGCCgCCG-CCGCcgccgagugccucacGGCCUGCCGCg -3'
miRNA:   3'- -GCGGa--CGG-GGCaGGCG---------------UUGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 83366 0.78 0.118876
Target:  5'- gCGCCgGCCCCagggcggcggcgGUCCGCAgGCCgGCCGCc -3'
miRNA:   3'- -GCGGaCGGGG------------CAGGCGU-UGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 48779 0.78 0.128059
Target:  5'- gCGCCUGCCCCGcuaccUCGCgAACCUGaCGCg -3'
miRNA:   3'- -GCGGACGGGGCa----GGCG-UUGGACgGCG- -5'
21725 3' -62.6 NC_004812.1 + 75166 0.77 0.137894
Target:  5'- gGCUcucgGCCUCGcUCCGC-GCCUGCCGCu -3'
miRNA:   3'- gCGGa---CGGGGC-AGGCGuUGGACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.