miRNA display CGI


Results 1 - 20 of 618 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21725 3' -62.6 NC_004812.1 + 155 0.79 0.115953
Target:  5'- gCGCC-GCCgCGcCCGCGGCCcGCCGCg -3'
miRNA:   3'- -GCGGaCGGgGCaGGCGUUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 224 0.69 0.445101
Target:  5'- gCGCa-GCCCCGgcccCCGCGGCC--CCGCu -3'
miRNA:   3'- -GCGgaCGGGGCa---GGCGUUGGacGGCG- -5'
21725 3' -62.6 NC_004812.1 + 282 0.66 0.622682
Target:  5'- gCGCgC-GCUCCG-CCGCcguCCgGCCGCg -3'
miRNA:   3'- -GCG-GaCGGGGCaGGCGuu-GGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 466 0.72 0.319796
Target:  5'- cCGCCggcgcGCCUgCGUgCGCAcgcGCCUGCUGCc -3'
miRNA:   3'- -GCGGa----CGGG-GCAgGCGU---UGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 551 0.76 0.163588
Target:  5'- cCGCCUcccGCCCCGgcgCgCGCGGCCgcguggaGCCGCg -3'
miRNA:   3'- -GCGGA---CGGGGCa--G-GCGUUGGa------CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 724 0.68 0.535954
Target:  5'- gCGCCgGCCCCGccccUCCcCuccCCcGCCGCg -3'
miRNA:   3'- -GCGGaCGGGGC----AGGcGuu-GGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 799 0.69 0.471507
Target:  5'- cCGCC-GcCCCCG-CCGCcGCCcgGCCGg -3'
miRNA:   3'- -GCGGaC-GGGGCaGGCGuUGGa-CGGCg -5'
21725 3' -62.6 NC_004812.1 + 855 0.67 0.56453
Target:  5'- gCGCgUGuCCCCGcggCCGCgAGCCccGcCCGCg -3'
miRNA:   3'- -GCGgAC-GGGGCa--GGCG-UUGGa-C-GGCG- -5'
21725 3' -62.6 NC_004812.1 + 1004 0.73 0.286462
Target:  5'- gGCCUGCCcggCCGgggCCGCGcccccgcgaggGCCcgGCCGCc -3'
miRNA:   3'- gCGGACGG---GGCa--GGCGU-----------UGGa-CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 1059 0.7 0.386889
Target:  5'- -uCCUGCCCgG-CCGCGgucuccuccuGCCcgGCCGCg -3'
miRNA:   3'- gcGGACGGGgCaGGCGU----------UGGa-CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 1163 0.66 0.651931
Target:  5'- aGCCcgGCCCC--CCGCucCCUcGUCGCc -3'
miRNA:   3'- gCGGa-CGGGGcaGGCGuuGGA-CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 1254 0.67 0.574149
Target:  5'- gCGCCgcgGCCgcCCGUUgGUccGCCgGCCGCg -3'
miRNA:   3'- -GCGGa--CGG--GGCAGgCGu-UGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 1310 0.67 0.583804
Target:  5'- gCGCCgacccccggGCCCCG-CCGCGcCCcGCCc- -3'
miRNA:   3'- -GCGGa--------CGGGGCaGGCGUuGGaCGGcg -5'
21725 3' -62.6 NC_004812.1 + 1389 0.73 0.255928
Target:  5'- gGCCcGCCCCGcgCCGCGcccCCUcucGCCGCc -3'
miRNA:   3'- gCGGaCGGGGCa-GGCGUu--GGA---CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 1410 0.73 0.249579
Target:  5'- gGCCcgGCCCCGacggcggCCGCGgggagggGCCgggGCCGCg -3'
miRNA:   3'- gCGGa-CGGGGCa------GGCGU-------UGGa--CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 1507 0.68 0.517185
Target:  5'- gGCCgGCCCgCGccgCCGCGcgagggcauGCCgccGCCGCc -3'
miRNA:   3'- gCGGaCGGG-GCa--GGCGU---------UGGa--CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 1655 0.7 0.394894
Target:  5'- gCGCCgcucCCCCGUuggccgcggcgCCGCGGCCcGcCCGCg -3'
miRNA:   3'- -GCGGac--GGGGCA-----------GGCGUUGGaC-GGCG- -5'
21725 3' -62.6 NC_004812.1 + 1727 0.75 0.193508
Target:  5'- cCGCCcgGCCCCGcgcgccUCCGCGGCCcgaGcCCGCg -3'
miRNA:   3'- -GCGGa-CGGGGC------AGGCGUUGGa--C-GGCG- -5'
21725 3' -62.6 NC_004812.1 + 1789 0.72 0.310857
Target:  5'- gGCCgcuccGCCCCG-CCGCAGCauggcggacgucgggGCCGCc -3'
miRNA:   3'- gCGGa----CGGGGCaGGCGUUGga-------------CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 1868 0.7 0.403007
Target:  5'- gGCCcGCUCC-UCCGCGACCc-CCGCc -3'
miRNA:   3'- gCGGaCGGGGcAGGCGUUGGacGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.