miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21725 5' -54.3 NC_004812.1 + 104838 0.66 0.953861
Target:  5'- -cGCGGCGGCggUCuGGCucuugGCCGCGccGGCGg -3'
miRNA:   3'- gaUGCUGUUGa-AG-CCG-----CGGUGC--UCGC- -5'
21725 5' -54.3 NC_004812.1 + 107627 0.66 0.953861
Target:  5'- -gGCGGCGcAUUUUGGCGCgGUGGGCc -3'
miRNA:   3'- gaUGCUGU-UGAAGCCGCGgUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 130655 0.66 0.953861
Target:  5'- -gACGGCGGCgUCGGC-CCGCGguccgGGCc -3'
miRNA:   3'- gaUGCUGUUGaAGCCGcGGUGC-----UCGc -5'
21725 5' -54.3 NC_004812.1 + 95312 0.66 0.949788
Target:  5'- -aACGACcGCggaGGcCGCCcaACGGGCGg -3'
miRNA:   3'- gaUGCUGuUGaagCC-GCGG--UGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 109493 0.66 0.953861
Target:  5'- gUGCGGCGGCUgcugCGucuCGCCGCGA-CGg -3'
miRNA:   3'- gAUGCUGUUGAa---GCc--GCGGUGCUcGC- -5'
21725 5' -54.3 NC_004812.1 + 128328 0.66 0.949788
Target:  5'- -cGCGACGGCgggcccgUCGGCcgGCCACuccucgggGGGCa -3'
miRNA:   3'- gaUGCUGUUGa------AGCCG--CGGUG--------CUCGc -5'
21725 5' -54.3 NC_004812.1 + 72074 0.66 0.949788
Target:  5'- -gGCGGCGGCUguuUCGcCGCCccCGAGCu -3'
miRNA:   3'- gaUGCUGUUGA---AGCcGCGGu-GCUCGc -5'
21725 5' -54.3 NC_004812.1 + 97393 0.66 0.949788
Target:  5'- -gGCGugGGCgcgCGG-GCCuCGGGCGc -3'
miRNA:   3'- gaUGCugUUGaa-GCCgCGGuGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 94641 0.66 0.949788
Target:  5'- --cCGGCGACgagGGCGCgggCGCGAGCu -3'
miRNA:   3'- gauGCUGUUGaagCCGCG---GUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 98497 0.66 0.949788
Target:  5'- gUGgGGCGGCgcggGGCGCCGgguccCGGGCGg -3'
miRNA:   3'- gAUgCUGUUGaag-CCGCGGU-----GCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 123126 0.66 0.949788
Target:  5'- --uCGGCGGCggCGGCGUCGgaGGCGg -3'
miRNA:   3'- gauGCUGUUGaaGCCGCGGUgcUCGC- -5'
21725 5' -54.3 NC_004812.1 + 148063 0.66 0.964724
Target:  5'- aUGCGGCuauaaaucACgggCGGuCGCCGCG-GCGa -3'
miRNA:   3'- gAUGCUGu-------UGaa-GCC-GCGGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 112863 0.66 0.953861
Target:  5'- ---aGACGAaacCGGCGCCgccgcgagggACGGGCGg -3'
miRNA:   3'- gaugCUGUUgaaGCCGCGG----------UGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 127693 0.66 0.949788
Target:  5'- -gGCGGCGGCgucgUCGuCGUCGgCGAGCa -3'
miRNA:   3'- gaUGCUGUUGa---AGCcGCGGU-GCUCGc -5'
21725 5' -54.3 NC_004812.1 + 46322 0.66 0.953861
Target:  5'- -gGCGACAGCcgccgccagUCcGCccGCCACGAGCc -3'
miRNA:   3'- gaUGCUGUUGa--------AGcCG--CGGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 15397 0.66 0.949788
Target:  5'- -gGCGACcgUggcCGGgGCCGuCGAGCGc -3'
miRNA:   3'- gaUGCUGuuGaa-GCCgCGGU-GCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 101129 0.66 0.949788
Target:  5'- -gGCGcGCAGC-UCGGC-CCaguagGCGAGCGa -3'
miRNA:   3'- gaUGC-UGUUGaAGCCGcGG-----UGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 82741 0.66 0.949788
Target:  5'- -gGCGGCAACggcCGGCugaaagaugGCCA-GGGCGg -3'
miRNA:   3'- gaUGCUGUUGaa-GCCG---------CGGUgCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 136385 0.66 0.948945
Target:  5'- -gGCGGCcGCgcuagccguugCgGGCGCCACGuGCGu -3'
miRNA:   3'- gaUGCUGuUGaa---------G-CCGCGGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 145115 0.66 0.949788
Target:  5'- gCUGCG-CGACgcgUCGGaggcgaGCgGCGGGCu -3'
miRNA:   3'- -GAUGCuGUUGa--AGCCg-----CGgUGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.