miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21725 5' -54.3 NC_004812.1 + 112978 0.74 0.594107
Target:  5'- -gGCGGCGAUggaucgCGGCGCCGCG-GCc -3'
miRNA:   3'- gaUGCUGUUGaa----GCCGCGGUGCuCGc -5'
21725 5' -54.3 NC_004812.1 + 119492 0.75 0.543561
Target:  5'- -cGCGGCGGCaggggCGGCGuCCGCGGGCc -3'
miRNA:   3'- gaUGCUGUUGaa---GCCGC-GGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 56947 0.75 0.553574
Target:  5'- -gGCGuugAGCUUCaGCGCCGCGAGCu -3'
miRNA:   3'- gaUGCug-UUGAAGcCGCGGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 69596 0.75 0.563642
Target:  5'- -cGCGACGGCggUGGC-CCGCGGGUGg -3'
miRNA:   3'- gaUGCUGUUGaaGCCGcGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 153177 0.75 0.563642
Target:  5'- -cGCGGCGGCU--GGCGCCGCGuGCc -3'
miRNA:   3'- gaUGCUGUUGAagCCGCGGUGCuCGc -5'
21725 5' -54.3 NC_004812.1 + 74062 0.75 0.563642
Target:  5'- -gGCGGCAGCggCgGGCGCgCGCGGGCc -3'
miRNA:   3'- gaUGCUGUUGaaG-CCGCG-GUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 121853 0.75 0.563642
Target:  5'- -cGCGGCGGCcgCGGCGaCCACG-GCGc -3'
miRNA:   3'- gaUGCUGUUGaaGCCGC-GGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 32498 0.75 0.573758
Target:  5'- -gGCGGCGuaccGCguugUCGGCGgCACGAGCu -3'
miRNA:   3'- gaUGCUGU----UGa---AGCCGCgGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 70549 0.74 0.594107
Target:  5'- gCUGCGACcgguGCUUCGcacguaGCGCCGCGAGa- -3'
miRNA:   3'- -GAUGCUGu---UGAAGC------CGCGGUGCUCgc -5'
21725 5' -54.3 NC_004812.1 + 129754 0.75 0.533608
Target:  5'- -gGCGGCGGCggCGGCGCCcgccGCG-GCGg -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCGG----UGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 126973 0.76 0.475442
Target:  5'- -gGCGGCGACgcCGGCGUCcucgGCGGGCGg -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCGG----UGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 130802 0.77 0.456755
Target:  5'- aCU-CGGCGACcUCGGCGagcuCCGCGAGCGc -3'
miRNA:   3'- -GAuGCUGUUGaAGCCGC----GGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 129314 0.83 0.210532
Target:  5'- -gACGGCGGCcUCGGCGCCGCcGGCGa -3'
miRNA:   3'- gaUGCUGUUGaAGCCGCGGUGcUCGC- -5'
21725 5' -54.3 NC_004812.1 + 65762 0.81 0.288021
Target:  5'- -cGCGGCGccgGCUUCcGCGCCGCGGGCGc -3'
miRNA:   3'- gaUGCUGU---UGAAGcCGCGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 59 0.79 0.345984
Target:  5'- -cGCGGCGGCg-CGGCGCCACGcGCGc -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCGGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 156469 0.79 0.345984
Target:  5'- -cGCGGCGGCg-CGGCGCCACGcGCGc -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCGGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 71897 0.79 0.361723
Target:  5'- -gACGGCGggccggGCggcgCGGCGCCGCGGGCGc -3'
miRNA:   3'- gaUGCUGU------UGaa--GCCGCGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 68168 0.79 0.377953
Target:  5'- --cCGGCAGggUCGGCgGCCGCGGGCGg -3'
miRNA:   3'- gauGCUGUUgaAGCCG-CGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 112753 0.78 0.40234
Target:  5'- -gGCGGCGccgccgcgcccggAC-UCGGCGCCGCGAGCc -3'
miRNA:   3'- gaUGCUGU-------------UGaAGCCGCGGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 137457 0.78 0.403198
Target:  5'- uCUGCcugGGCGACUUCGGCGCCGCcuGCu -3'
miRNA:   3'- -GAUG---CUGUUGAAGCCGCGGUGcuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.