miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21725 5' -54.3 NC_004812.1 + 59 0.79 0.345984
Target:  5'- -cGCGGCGGCg-CGGCGCCACGcGCGc -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCGGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 571 0.66 0.961325
Target:  5'- -cGCGGCcGCgu-GGaGCCGCGGGCGc -3'
miRNA:   3'- gaUGCUGuUGaagCCgCGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 757 0.67 0.925883
Target:  5'- -cGCGccuCGcCUccCGGCGCCGCGGGCc -3'
miRNA:   3'- gaUGCu--GUuGAa-GCCGCGGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 1209 0.66 0.957706
Target:  5'- gCU-CGGCcgggggCGGCGCCGCGGGgGc -3'
miRNA:   3'- -GAuGCUGuugaa-GCCGCGGUGCUCgC- -5'
21725 5' -54.3 NC_004812.1 + 1258 0.68 0.902453
Target:  5'- -cGCGGCcGCccgUUGGUccgccgGCCGCGGGCGg -3'
miRNA:   3'- gaUGCUGuUGa--AGCCG------CGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 1421 0.66 0.962711
Target:  5'- -gACGGCGGCcgcggggaggggcCGGgGCCGCGAGgGc -3'
miRNA:   3'- gaUGCUGUUGaa-----------GCCgCGGUGCUCgC- -5'
21725 5' -54.3 NC_004812.1 + 1465 0.76 0.475442
Target:  5'- -gGCGGCGACgcCGGCGUCcucgGCGGGCGg -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCGG----UGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 2184 0.66 0.949788
Target:  5'- -gGCGGCGGCgucgUCGuCGUCGgCGAGCa -3'
miRNA:   3'- gaUGCUGUUGa---AGCcGCGGU-GCUCGc -5'
21725 5' -54.3 NC_004812.1 + 2250 0.74 0.624822
Target:  5'- -cGCGGCGGCgggguccgcgUCGGCGUccgcgcgcagCACGAGCGg -3'
miRNA:   3'- gaUGCUGUUGa---------AGCCGCG----------GUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 2485 0.71 0.76511
Target:  5'- --cCGGCGGCggCGGCcUCGCGGGCGg -3'
miRNA:   3'- gauGCUGUUGaaGCCGcGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 2609 0.69 0.875286
Target:  5'- -cGCGGUAGCgcacgUUGGCGCCGCGgcccaGGCGc -3'
miRNA:   3'- gaUGCUGUUGa----AGCCGCGGUGC-----UCGC- -5'
21725 5' -54.3 NC_004812.1 + 2730 0.67 0.94094
Target:  5'- -cACGGCGcgGCgcaggUCGcGCGCgGCGGGCc -3'
miRNA:   3'- gaUGCUGU--UGa----AGC-CGCGgUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 2820 0.66 0.949788
Target:  5'- -cGCGACGGCgggcccgUCGGCcgGCCACuccucgggGGGCa -3'
miRNA:   3'- gaUGCUGUUGa------AGCCG--CGGUG--------CUCGc -5'
21725 5' -54.3 NC_004812.1 + 2879 0.74 0.624822
Target:  5'- -gGCGGCGGCcggCGGCgGCgGCGAGCa -3'
miRNA:   3'- gaUGCUGUUGaa-GCCG-CGgUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 3197 0.72 0.706365
Target:  5'- -gGCGGCGGCg-CGGCGCaGCGGGCc -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCGgUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 3395 0.68 0.902453
Target:  5'- -gGCGGCGGCggagGGCGCCgGCGuGUGg -3'
miRNA:   3'- gaUGCUGUUGaag-CCGCGG-UGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 3430 0.66 0.952663
Target:  5'- --cCGGCGGCacgCGGCGCCAgccgccgcggggguCGGGCc -3'
miRNA:   3'- gauGCUGUUGaa-GCCGCGGU--------------GCUCGc -5'
21725 5' -54.3 NC_004812.1 + 3480 0.67 0.931142
Target:  5'- -cGCGccguCAGCgcggCGG-GCCGCGGGCGc -3'
miRNA:   3'- gaUGCu---GUUGaa--GCCgCGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 3581 0.7 0.819589
Target:  5'- -gGCGGCGGCggCGGCGg-GCGGGCGc -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCggUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 3630 0.66 0.964724
Target:  5'- -cGCGcCGGCgggcgcgCGGCGCCGCccGCGu -3'
miRNA:   3'- gaUGCuGUUGaa-----GCCGCGGUGcuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.