miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21725 5' -54.3 NC_004812.1 + 141639 1.09 0.004494
Target:  5'- uCUACGACAACUUCGGCGCCACGAGCGa -3'
miRNA:   3'- -GAUGCUGUUGAAGCCGCGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 59040 0.88 0.108166
Target:  5'- aCUACGGCAGCcccagGGCGCCACGGGCGg -3'
miRNA:   3'- -GAUGCUGUUGaag--CCGCGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 3806 0.83 0.210532
Target:  5'- -gACGGCGGCcUCGGCGCCGCcGGCGa -3'
miRNA:   3'- gaUGCUGUUGaAGCCGCGGUGcUCGC- -5'
21725 5' -54.3 NC_004812.1 + 129314 0.83 0.210532
Target:  5'- -gACGGCGGCcUCGGCGCCGCcGGCGa -3'
miRNA:   3'- gaUGCUGUUGaAGCCGCGGUGcUCGC- -5'
21725 5' -54.3 NC_004812.1 + 118968 0.82 0.232253
Target:  5'- aCUGCGACGGCcUCauGCGCCGCGAGCa -3'
miRNA:   3'- -GAUGCUGUUGaAGc-CGCGGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 87049 0.82 0.243806
Target:  5'- gCUGCGGC-GCggcCGGCGCCGCGGGCa -3'
miRNA:   3'- -GAUGCUGuUGaa-GCCGCGGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 65762 0.81 0.288021
Target:  5'- -cGCGGCGccgGCUUCcGCGCCGCGGGCGc -3'
miRNA:   3'- gaUGCUGU---UGAAGcCGCGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 30960 0.79 0.345984
Target:  5'- -cGCGGCGGCg-CGGCGCCACGcGCGc -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCGGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 59 0.79 0.345984
Target:  5'- -cGCGGCGGCg-CGGCGCCACGcGCGc -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCGGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 156469 0.79 0.345984
Target:  5'- -cGCGGCGGCg-CGGCGCCACGcGCGc -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCGGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 71897 0.79 0.361723
Target:  5'- -gACGGCGggccggGCggcgCGGCGCCGCGGGCGc -3'
miRNA:   3'- gaUGCUGU------UGaa--GCCGCGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 68168 0.79 0.377953
Target:  5'- --cCGGCAGggUCGGCgGCCGCGGGCGg -3'
miRNA:   3'- gauGCUGUUgaAGCCG-CGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 54485 0.78 0.38458
Target:  5'- aCUACGACAGCgacggcggggcCGGCGgCACGGGCa -3'
miRNA:   3'- -GAUGCUGUUGaa---------GCCGCgGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 112753 0.78 0.40234
Target:  5'- -gGCGGCGccgccgcgcccggAC-UCGGCGCCGCGAGCc -3'
miRNA:   3'- gaUGCUGU-------------UGaAGCCGCGGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 137457 0.78 0.403198
Target:  5'- uCUGCcugGGCGACUUCGGCGCCGCcuGCu -3'
miRNA:   3'- -GAUG---CUGUUGAAGCCGCGGUGcuCGc -5'
21725 5' -54.3 NC_004812.1 + 58275 0.77 0.43847
Target:  5'- -gACGACGGCcggUCGGCGUaCGCGAGCc -3'
miRNA:   3'- gaUGCUGUUGa--AGCCGCG-GUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 130802 0.77 0.456755
Target:  5'- aCU-CGGCGACcUCGGCGagcuCCGCGAGCGc -3'
miRNA:   3'- -GAuGCUGUUGaAGCCGC----GGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 5294 0.77 0.456755
Target:  5'- aCU-CGGCGACcUCGGCGagcuCCGCGAGCGc -3'
miRNA:   3'- -GAuGCUGUUGaAGCCGC----GGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 1465 0.76 0.475442
Target:  5'- -gGCGGCGACgcCGGCGUCcucgGCGGGCGg -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCGG----UGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 126973 0.76 0.475442
Target:  5'- -gGCGGCGACgcCGGCGUCcucgGCGGGCGg -3'
miRNA:   3'- gaUGCUGUUGaaGCCGCGG----UGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.