miRNA display CGI


Results 1 - 20 of 297 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 3' -54.8 NC_004812.1 + 126973 0.66 0.922374
Target:  5'- -gGCGGCGAcGccG-GCGUCcucgGCGGGCg -3'
miRNA:   3'- caCGCCGCU-CuaCgCGUAGa---UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 19640 0.66 0.922374
Target:  5'- -cGCGGCGAcGUGgGCcgCcaggGCGAGg -3'
miRNA:   3'- caCGCCGCUcUACgCGuaGa---UGCUCg -5'
21726 3' -54.8 NC_004812.1 + 139531 0.66 0.933033
Target:  5'- -gGCGGggacagcgccaCGGGggGCGCGUCcGCG-GCg -3'
miRNA:   3'- caCGCC-----------GCUCuaCGCGUAGaUGCuCG- -5'
21726 3' -54.8 NC_004812.1 + 6122 0.66 0.927826
Target:  5'- -gGCGGCGGGcUGC-CGgggaagGCGGGCg -3'
miRNA:   3'- caCGCCGCUCuACGcGUaga---UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 132524 0.66 0.933033
Target:  5'- -cGCGGCGGGucgGCGCAcaUUUcccccggggacGCGAGg -3'
miRNA:   3'- caCGCCGCUCua-CGCGU--AGA-----------UGCUCg -5'
21726 3' -54.8 NC_004812.1 + 25349 0.66 0.933033
Target:  5'- -gGCGGUGGGcgGCGa--CcACGGGCu -3'
miRNA:   3'- caCGCCGCUCuaCGCguaGaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 29903 0.66 0.927826
Target:  5'- cGUGCaGGUGGgccgcGAUGCGCGgcccgCggguggaGCGAGCa -3'
miRNA:   3'- -CACG-CCGCU-----CUACGCGUa----Ga------UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 121719 0.66 0.927826
Target:  5'- -gGCGGCGAGAgcagGUGCc----CGGGCc -3'
miRNA:   3'- caCGCCGCUCUa---CGCGuagauGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 122246 0.66 0.933033
Target:  5'- -gGCGGCGGG--GCGCGg--GCGGGg -3'
miRNA:   3'- caCGCCGCUCuaCGCGUagaUGCUCg -5'
21726 3' -54.8 NC_004812.1 + 7718 0.66 0.922374
Target:  5'- -cGCGGCGGGGgucuccGCGCcgg-GCGAGg -3'
miRNA:   3'- caCGCCGCUCUa-----CGCGuagaUGCUCg -5'
21726 3' -54.8 NC_004812.1 + 22899 0.66 0.937997
Target:  5'- --aCGGcCGAGGUGCGCGgggGCGuGGCc -3'
miRNA:   3'- cacGCC-GCUCUACGCGUagaUGC-UCG- -5'
21726 3' -54.8 NC_004812.1 + 41425 0.66 0.927291
Target:  5'- uGUGCGG-GGGGUGCGUuuacuccGUCUGCc-GCc -3'
miRNA:   3'- -CACGCCgCUCUACGCG-------UAGAUGcuCG- -5'
21726 3' -54.8 NC_004812.1 + 148973 0.66 0.922374
Target:  5'- -cGuCGGCGAGgcGCGCG---GCGAGg -3'
miRNA:   3'- caC-GCCGCUCuaCGCGUagaUGCUCg -5'
21726 3' -54.8 NC_004812.1 + 93114 0.66 0.933033
Target:  5'- -cGCGGUgucGGGcgGCgGCGUCUGCGuGa -3'
miRNA:   3'- caCGCCG---CUCuaCG-CGUAGAUGCuCg -5'
21726 3' -54.8 NC_004812.1 + 128013 0.66 0.927826
Target:  5'- -gGCgGGCGAGucggcgGCGCGgccguCGAGCg -3'
miRNA:   3'- caCG-CCGCUCua----CGCGUagau-GCUCG- -5'
21726 3' -54.8 NC_004812.1 + 5385 0.66 0.927826
Target:  5'- -cGCGGCGGGAgggGgGUcgggGUCUcccagggacgcgGCGGGCc -3'
miRNA:   3'- caCGCCGCUCUa--CgCG----UAGA------------UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 122814 0.66 0.947201
Target:  5'- -gGCuGUGGGcgGCGCA---GCGGGCg -3'
miRNA:   3'- caCGcCGCUCuaCGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 25078 0.66 0.933033
Target:  5'- -aGCGGgGAGAUgGUGCGUCgcuccagauCGGGg -3'
miRNA:   3'- caCGCCgCUCUA-CGCGUAGau-------GCUCg -5'
21726 3' -54.8 NC_004812.1 + 128387 0.66 0.927826
Target:  5'- -gGCGGCGGccgGCgGCGgcgGCGAGCa -3'
miRNA:   3'- caCGCCGCUcuaCG-CGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 96782 0.66 0.937997
Target:  5'- -gGCGGCGGGuucGCaccgGCcgCUgGCGGGCg -3'
miRNA:   3'- caCGCCGCUCua-CG----CGuaGA-UGCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.