Results 1 - 20 of 297 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21726 | 3' | -54.8 | NC_004812.1 | + | 144889 | 1.11 | 0.00277 |
Target: 5'- aGUGCGGCGAGAUGCGCAUCUACGAGCc -3' miRNA: 3'- -CACGCCGCUCUACGCGUAGAUGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 108182 | 0.82 | 0.21449 |
Target: 5'- -cGCGaGCGAGAagGCGCG-CUACGAGCg -3' miRNA: 3'- caCGC-CGCUCUa-CGCGUaGAUGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 155213 | 0.8 | 0.280235 |
Target: 5'- -gGCGGCGAGAggggGCGCGgcgCgggGCGGGCc -3' miRNA: 3'- caCGCCGCUCUa---CGCGUa--Ga--UGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 124312 | 0.8 | 0.280235 |
Target: 5'- -gGCGGCGAGAggggGCGCGgcgCgggGCGGGCc -3' miRNA: 3'- caCGCCGCUCUa---CGCGUa--Ga--UGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 79436 | 0.78 | 0.353045 |
Target: 5'- -gGCGGCGGGGacgGCGCcgCcGCGGGCg -3' miRNA: 3'- caCGCCGCUCUa--CGCGuaGaUGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 94337 | 0.77 | 0.394164 |
Target: 5'- uGUGCGGCGcGGccUGCGCGgg-GCGGGCg -3' miRNA: 3'- -CACGCCGCuCU--ACGCGUagaUGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 135235 | 0.75 | 0.528103 |
Target: 5'- -cGCGGCGcGGAgcucGCGCGUCUACGcccgguuccgauacaAGCa -3' miRNA: 3'- caCGCCGC-UCUa---CGCGUAGAUGC---------------UCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 120378 | 0.74 | 0.534089 |
Target: 5'- -cGCGGCcGGggGCGCGUacGCGGGCg -3' miRNA: 3'- caCGCCGcUCuaCGCGUAgaUGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 100954 | 0.74 | 0.544117 |
Target: 5'- -cGUGGCGGGgcGCGCcgccgcggacGUCcGCGAGCg -3' miRNA: 3'- caCGCCGCUCuaCGCG----------UAGaUGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 82355 | 0.74 | 0.554206 |
Target: 5'- -cGCGGcCGGGGcgagGCGUAcCUGCGGGCg -3' miRNA: 3'- caCGCC-GCUCUa---CGCGUaGAUGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 36160 | 0.74 | 0.563332 |
Target: 5'- -gGCGGCGcagGGGUGCGCGgggucgcUCUGgGAGUg -3' miRNA: 3'- caCGCCGC---UCUACGCGU-------AGAUgCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 146447 | 0.74 | 0.564349 |
Target: 5'- -cGCGGCGAGGauguUGCGCAggCUGgGGGg -3' miRNA: 3'- caCGCCGCUCU----ACGCGUa-GAUgCUCg -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 153357 | 0.73 | 0.595041 |
Target: 5'- -gGCGGCGGGGgcgcggGCGCccCUgGCGGGCg -3' miRNA: 3'- caCGCCGCUCUa-----CGCGuaGA-UGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 26703 | 0.73 | 0.595041 |
Target: 5'- -gGCGGCGAcgGAUccacgcagGCGCGUCgcacgGCGGGCc -3' miRNA: 3'- caCGCCGCU--CUA--------CGCGUAGa----UGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 145137 | 0.73 | 0.595041 |
Target: 5'- -aGCGGCGGGcuguacGUGUGCGUCguguacgucaACGGGCa -3' miRNA: 3'- caCGCCGCUC------UACGCGUAGa---------UGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 122456 | 0.73 | 0.595041 |
Target: 5'- -gGCGGCGGGG-GCGCGggCgccccugGCGGGCg -3' miRNA: 3'- caCGCCGCUCUaCGCGUa-Ga------UGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 2253 | 0.73 | 0.605337 |
Target: 5'- -gGCGGCGGGGUcCGCGUCgGCGuccGCg -3' miRNA: 3'- caCGCCGCUCUAcGCGUAGaUGCu--CG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 119492 | 0.73 | 0.605337 |
Target: 5'- -cGCGGCGgcAGggGCgGCGUCcGCGGGCc -3' miRNA: 3'- caCGCCGC--UCuaCG-CGUAGaUGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 77055 | 0.73 | 0.605337 |
Target: 5'- -cGCGGCGAGGcgcucGCGCGcCU-CGGGCg -3' miRNA: 3'- caCGCCGCUCUa----CGCGUaGAuGCUCG- -5' |
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21726 | 3' | -54.8 | NC_004812.1 | + | 127761 | 0.73 | 0.605337 |
Target: 5'- -gGCGGCGGGGUcCGCGUCgGCGuccGCg -3' miRNA: 3'- caCGCCGCUCUAcGCGUAGaUGCu--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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