miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 3' -54.8 NC_004812.1 + 74692 0.71 0.718137
Target:  5'- -aGCcGCGGGuaGUGCGCGUCcgccACGAGCc -3'
miRNA:   3'- caCGcCGCUC--UACGCGUAGa---UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 4988 0.72 0.646646
Target:  5'- -cGCGGgGGGccGUGCGCcgCaggGCGGGCg -3'
miRNA:   3'- caCGCCgCUC--UACGCGuaGa--UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 77502 0.72 0.655933
Target:  5'- --cCGGCGGGccacuuccugcacGUGCGCGUCaaagGCGGGCa -3'
miRNA:   3'- cacGCCGCUC-------------UACGCGUAGa---UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 24769 0.72 0.656964
Target:  5'- -cGCGGCGucGAUGCGCAccggggugaugaUCagggcgACGGGCa -3'
miRNA:   3'- caCGCCGCu-CUACGCGU------------AGa-----UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 72236 0.72 0.656964
Target:  5'- cUGCGGCGGG--GCGUccgGUCgGCGGGCg -3'
miRNA:   3'- cACGCCGCUCuaCGCG---UAGaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 128243 0.72 0.667262
Target:  5'- -cGCGGCGcAGGUcGCGCGcg-GCGGGCc -3'
miRNA:   3'- caCGCCGC-UCUA-CGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 149005 0.72 0.687763
Target:  5'- uGUGCGGCGGGccggGCGCGgcgGCGccGGCu -3'
miRNA:   3'- -CACGCCGCUCua--CGCGUagaUGC--UCG- -5'
21726 3' -54.8 NC_004812.1 + 7942 0.72 0.687763
Target:  5'- -cGCGGcCGGGggGCGCGUCcgggGgGGGCc -3'
miRNA:   3'- caCGCC-GCUCuaCGCGUAGa---UgCUCG- -5'
21726 3' -54.8 NC_004812.1 + 128786 0.71 0.709084
Target:  5'- -cGCGGCGAGcgaggccagcgcgcGCGgGUCgaagGCGAGCg -3'
miRNA:   3'- caCGCCGCUCua------------CGCgUAGa---UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 136793 0.73 0.625982
Target:  5'- cUGCuGGcCGAGAUGCGCAgCaGCGAGg -3'
miRNA:   3'- cACG-CC-GCUCUACGCGUaGaUGCUCg -5'
21726 3' -54.8 NC_004812.1 + 7638 0.73 0.615653
Target:  5'- -gGCGGcCGGGGUcgggGCGCGaagCUGCGGGCc -3'
miRNA:   3'- caCGCC-GCUCUA----CGCGUa--GAUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 119492 0.73 0.605337
Target:  5'- -cGCGGCGgcAGggGCgGCGUCcGCGGGCc -3'
miRNA:   3'- caCGCCGC--UCuaCG-CGUAGaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 108182 0.82 0.21449
Target:  5'- -cGCGaGCGAGAagGCGCG-CUACGAGCg -3'
miRNA:   3'- caCGC-CGCUCUa-CGCGUaGAUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 124312 0.8 0.280235
Target:  5'- -gGCGGCGAGAggggGCGCGgcgCgggGCGGGCc -3'
miRNA:   3'- caCGCCGCUCUa---CGCGUa--Ga--UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 36160 0.74 0.563332
Target:  5'- -gGCGGCGcagGGGUGCGCGgggucgcUCUGgGAGUg -3'
miRNA:   3'- caCGCCGC---UCUACGCGU-------AGAUgCUCG- -5'
21726 3' -54.8 NC_004812.1 + 122456 0.73 0.595041
Target:  5'- -gGCGGCGGGG-GCGCGggCgccccugGCGGGCg -3'
miRNA:   3'- caCGCCGCUCUaCGCGUa-Ga------UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 145137 0.73 0.595041
Target:  5'- -aGCGGCGGGcuguacGUGUGCGUCguguacgucaACGGGCa -3'
miRNA:   3'- caCGCCGCUC------UACGCGUAGa---------UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 26703 0.73 0.595041
Target:  5'- -gGCGGCGAcgGAUccacgcagGCGCGUCgcacgGCGGGCc -3'
miRNA:   3'- caCGCCGCU--CUA--------CGCGUAGa----UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 127761 0.73 0.605337
Target:  5'- -gGCGGCGGGGUcCGCGUCgGCGuccGCg -3'
miRNA:   3'- caCGCCGCUCUAcGCGUAGaUGCu--CG- -5'
21726 3' -54.8 NC_004812.1 + 77055 0.73 0.605337
Target:  5'- -cGCGGCGAGGcgcucGCGCGcCU-CGGGCg -3'
miRNA:   3'- caCGCCGCUCUa----CGCGUaGAuGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.