miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 3' -54.8 NC_004812.1 + 36 0.68 0.850083
Target:  5'- -gGgGGCGGGGguucguucggggggGCGCGUUUggGCGGGCu -3'
miRNA:   3'- caCgCCGCUCUa-------------CGCGUAGA--UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 43 0.68 0.884609
Target:  5'- -cGCGGCGGGccgcggGCGCGgcgGCGcGGCg -3'
miRNA:   3'- caCGCCGCUCua----CGCGUagaUGC-UCG- -5'
21726 3' -54.8 NC_004812.1 + 675 0.67 0.898147
Target:  5'- -gGCGGCGcGAggggaGCGCGUCccCGGGUc -3'
miRNA:   3'- caCGCCGCuCUa----CGCGUAGauGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 1465 0.66 0.922374
Target:  5'- -gGCGGCGAcGccG-GCGUCcucgGCGGGCg -3'
miRNA:   3'- caCGCCGCU-CuaCgCGUAGa---UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 2048 0.71 0.718137
Target:  5'- -gGCGGCGGGggGCGCGggggaGgGGGCg -3'
miRNA:   3'- caCGCCGCUCuaCGCGUaga--UgCUCG- -5'
21726 3' -54.8 NC_004812.1 + 2166 0.68 0.84444
Target:  5'- -gGCGGCGgccaccuccacggcGGcgGCGuCGUCgucgucgGCGAGCa -3'
miRNA:   3'- caCGCCGC--------------UCuaCGC-GUAGa------UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 2253 0.73 0.605337
Target:  5'- -gGCGGCGGGGUcCGCGUCgGCGuccGCg -3'
miRNA:   3'- caCGCCGCUCUAcGCGUAGaUGCu--CG- -5'
21726 3' -54.8 NC_004812.1 + 2505 0.66 0.927826
Target:  5'- -gGCGGgCGAGucggcgGCGCGgccguCGAGCg -3'
miRNA:   3'- caCGCC-GCUCua----CGCGUagau-GCUCG- -5'
21726 3' -54.8 NC_004812.1 + 2634 0.68 0.854842
Target:  5'- -cGCcccGCGAGAccUGCGcCGUCUGCacgGAGCg -3'
miRNA:   3'- caCGc--CGCUCU--ACGC-GUAGAUG---CUCG- -5'
21726 3' -54.8 NC_004812.1 + 2641 0.71 0.728125
Target:  5'- -cGCGGCG-GcgGCGCGUC--CGGGUa -3'
miRNA:   3'- caCGCCGCuCuaCGCGUAGauGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 2735 0.72 0.667262
Target:  5'- -cGCGGCGcAGGUcGCGCGcg-GCGGGCc -3'
miRNA:   3'- caCGCCGC-UCUA-CGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 2879 0.66 0.927826
Target:  5'- -gGCGGCGGccgGCgGCGgcgGCGAGCa -3'
miRNA:   3'- caCGCCGCUcuaCG-CGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 3053 0.69 0.825234
Target:  5'- -cGCGGCGAGcaggaaggagaggccGccgcGCGCGUCgguccagGCGGGCg -3'
miRNA:   3'- caCGCCGCUC---------------Ua---CGCGUAGa------UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 3101 0.67 0.910742
Target:  5'- -cGgGGCGGGGgagGCGCcgC--CGAGCu -3'
miRNA:   3'- caCgCCGCUCUa--CGCGuaGauGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 3197 0.71 0.728125
Target:  5'- -gGCGGCGGcGcgGCGCA---GCGGGCc -3'
miRNA:   3'- caCGCCGCU-CuaCGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 3228 0.68 0.876773
Target:  5'- -cGCGGCGGGccgaagGCGCGgccggagccgggcUCggGCGGGCc -3'
miRNA:   3'- caCGCCGCUCua----CGCGU-------------AGa-UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 3278 0.71 0.709084
Target:  5'- -cGCGGCGAGcgaggccagcgcgcGCGgGUCgaagGCGAGCg -3'
miRNA:   3'- caCGCCGCUCua------------CGCgUAGa---UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 3491 0.66 0.942719
Target:  5'- -cGCGGCGGGccGCGgGc--GCGGGCc -3'
miRNA:   3'- caCGCCGCUCuaCGCgUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 3542 0.67 0.916679
Target:  5'- -cGCGGCGccGGGccggcucuucuUGCGCGcCgGCGGGCa -3'
miRNA:   3'- caCGCCGC--UCU-----------ACGCGUaGaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 3590 0.7 0.785942
Target:  5'- -gGCGGCGGGcggGCGCGcCgGCGAGg -3'
miRNA:   3'- caCGCCGCUCua-CGCGUaGaUGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.