miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 5' -62.7 NC_004812.1 + 64702 0.66 0.592073
Target:  5'- aCCGCCUGgaGGCcgacuucCCCGAG-GCCGCg -3'
miRNA:   3'- -GGUGGGCg-UCGac-----GGGCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 105172 0.66 0.58235
Target:  5'- cCCGCCUGCgAGC-GgCCGcGUGCCuGCg -3'
miRNA:   3'- -GGUGGGCG-UCGaCgGGCuCACGG-CGa -5'
21726 5' -62.7 NC_004812.1 + 73160 0.66 0.592073
Target:  5'- aCCAgCaCGC-GCUgGCCCGAGgGCCGgUa -3'
miRNA:   3'- -GGUgG-GCGuCGA-CGGGCUCaCGGCgA- -5'
21726 5' -62.7 NC_004812.1 + 94572 0.66 0.592073
Target:  5'- -gGCUCGgGGCcuccuccGCCCGAG-GCCGCc -3'
miRNA:   3'- ggUGGGCgUCGa------CGGGCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 48294 0.66 0.58235
Target:  5'- aCGgCCGCGGCggUGgCCGAGgaggccgacGCCGCg -3'
miRNA:   3'- gGUgGGCGUCG--ACgGGCUCa--------CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 87705 0.66 0.592073
Target:  5'- -gGCCCGCAGCggcgGCaUCGGgcuGUGCCuGCa -3'
miRNA:   3'- ggUGGGCGUCGa---CG-GGCU---CACGG-CGa -5'
21726 5' -62.7 NC_004812.1 + 108372 0.66 0.592073
Target:  5'- gCCGCgCUGCAGgagGCCCuGG-GCCGCg -3'
miRNA:   3'- -GGUG-GGCGUCga-CGGGcUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 122277 0.66 0.592073
Target:  5'- aCCACggggggCGCGGCggcGCCgGAGgGCCGCc -3'
miRNA:   3'- -GGUGg-----GCGUCGa--CGGgCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 86294 0.66 0.58235
Target:  5'- cCCugCCcCGGCaUGgCCGAGUuCCGCg -3'
miRNA:   3'- -GGugGGcGUCG-ACgGGCUCAcGGCGa -5'
21726 5' -62.7 NC_004812.1 + 41269 0.66 0.592073
Target:  5'- -uGCCCGCccccGCUGCCCcaacGCCGCc -3'
miRNA:   3'- ggUGGGCGu---CGACGGGcucaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 135038 0.66 0.601822
Target:  5'- aCACCCccgGCAGCUGUCgGAGgaUG-CGCUu -3'
miRNA:   3'- gGUGGG---CGUCGACGGgCUC--ACgGCGA- -5'
21726 5' -62.7 NC_004812.1 + 1687 0.66 0.58235
Target:  5'- cCCGCCCGCGGCgggggaUGCCCua-UGCUGa- -3'
miRNA:   3'- -GGUGGGCGUCG------ACGGGcucACGGCga -5'
21726 5' -62.7 NC_004812.1 + 4041 0.66 0.58235
Target:  5'- gCCGCCCGCcGCUccGCcuccgCCGcAG-GCCGCUc -3'
miRNA:   3'- -GGUGGGCGuCGA--CG-----GGC-UCaCGGCGA- -5'
21726 5' -62.7 NC_004812.1 + 26950 0.66 0.601822
Target:  5'- gCCAgCCCGCAGUcgUGCCCcaGGGggcgccCCGCg -3'
miRNA:   3'- -GGU-GGGCGUCG--ACGGG--CUCac----GGCGa -5'
21726 5' -62.7 NC_004812.1 + 44303 0.66 0.595969
Target:  5'- gCCGCCCGaGGCgcgacucgagcucgGCCCGGGcgGgCGCg -3'
miRNA:   3'- -GGUGGGCgUCGa-------------CGGGCUCa-CgGCGa -5'
21726 5' -62.7 NC_004812.1 + 126491 0.66 0.586236
Target:  5'- -uGCCCGCccccgaucuucacuaGGcCUGCCCGGccgggGCCGCg -3'
miRNA:   3'- ggUGGGCG---------------UC-GACGGGCUca---CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 103287 0.66 0.592073
Target:  5'- gCCcCCCGCAcGCUGa-CG-GUGCCGUg -3'
miRNA:   3'- -GGuGGGCGU-CGACggGCuCACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 142766 0.66 0.592073
Target:  5'- aCUACCCGCcgGGC-GCCCGc-UGcCCGCg -3'
miRNA:   3'- -GGUGGGCG--UCGaCGGGCucAC-GGCGa -5'
21726 5' -62.7 NC_004812.1 + 116154 0.66 0.592073
Target:  5'- gCCACagggCCGCGGCgcgGCaucgguaugCCGGG-GCCGCg -3'
miRNA:   3'- -GGUG----GGCGUCGa--CG---------GGCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 101831 0.66 0.58235
Target:  5'- gCC-CCCGCuaGGUcgGCCaCGAGcGCCGCc -3'
miRNA:   3'- -GGuGGGCG--UCGa-CGG-GCUCaCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.