miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 5' -62.7 NC_004812.1 + 144925 1.08 0.000816
Target:  5'- aCCACCCGCAGCUGCCCGAGUGCCGCUc -3'
miRNA:   3'- -GGUGGGCGUCGACGGGCUCACGGCGA- -5'
21726 5' -62.7 NC_004812.1 + 124203 0.78 0.111817
Target:  5'- gCGCCCGCGGCgGCgaCCGAG-GCCGCg -3'
miRNA:   3'- gGUGGGCGUCGaCG--GGCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 85402 0.77 0.139876
Target:  5'- gCCGCCCGCucgccgccuGGCgcgGCCCGcGGUGUCGCg -3'
miRNA:   3'- -GGUGGGCG---------UCGa--CGGGC-UCACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 130710 0.77 0.143365
Target:  5'- gCGCCCGCGGCgcuggGCgCGGGcGCCGCg -3'
miRNA:   3'- gGUGGGCGUCGa----CGgGCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 49194 0.76 0.15813
Target:  5'- aCCGCCUGCAGCUGggcaugcucauCCCGggggcGGUGCCGUc -3'
miRNA:   3'- -GGUGGGCGUCGAC-----------GGGC-----UCACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 30181 0.76 0.16203
Target:  5'- gCCGCgCGCGGCUGCCUGGGggGCacaGCUc -3'
miRNA:   3'- -GGUGgGCGUCGACGGGCUCa-CGg--CGA- -5'
21726 5' -62.7 NC_004812.1 + 24546 0.76 0.166017
Target:  5'- aCCACCCGCAGCU-CCgGGGagauguagaaguUGCCGCc -3'
miRNA:   3'- -GGUGGGCGUCGAcGGgCUC------------ACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 19258 0.76 0.170091
Target:  5'- gCGCCCaGCAGCUGCCgggCGAGcGCCGUc -3'
miRNA:   3'- gGUGGG-CGUCGACGG---GCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 80315 0.76 0.170091
Target:  5'- aCCGCgCCGC-GCUGCUgGAGgcgGCCGCg -3'
miRNA:   3'- -GGUG-GGCGuCGACGGgCUCa--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 153172 0.75 0.178509
Target:  5'- aCC-CCCGCGGCggcugGCgCCGcGUGCCGCc -3'
miRNA:   3'- -GGuGGGCGUCGa----CG-GGCuCACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 75531 0.75 0.178509
Target:  5'- uCCGCCCGCAGC-GCgUCGAGgcgGUCGCa -3'
miRNA:   3'- -GGUGGGCGUCGaCG-GGCUCa--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 27664 0.75 0.178509
Target:  5'- aCC-CCCGCGGCggcugGCgCCGcGUGCCGCc -3'
miRNA:   3'- -GGuGGGCGUCGa----CG-GGCuCACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 10869 0.75 0.182855
Target:  5'- uCCGCCCGCGcGC--CCCGGGUcGCCGCg -3'
miRNA:   3'- -GGUGGGCGU-CGacGGGCUCA-CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 90282 0.75 0.185508
Target:  5'- cCCGCCUGCAGCgcgggcgacgggcGCCUGGGcGCCGCc -3'
miRNA:   3'- -GGUGGGCGUCGa------------CGGGCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 137591 0.75 0.187295
Target:  5'- gCCGCCCGC-GCUGCgCCGGcccgcgGCCGCg -3'
miRNA:   3'- -GGUGGGCGuCGACG-GGCUca----CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 140396 0.75 0.191829
Target:  5'- uCCGCCUcCGGCgcgcgGCCCGGGUccGCCGCg -3'
miRNA:   3'- -GGUGGGcGUCGa----CGGGCUCA--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 119392 0.74 0.206013
Target:  5'- cCUGCCCGgGGCcccccgcgUGCCCGGGggcGCCGCUc -3'
miRNA:   3'- -GGUGGGCgUCG--------ACGGGCUCa--CGGCGA- -5'
21726 5' -62.7 NC_004812.1 + 150293 0.74 0.206013
Target:  5'- cCUGCCCGgGGCcccccgcgUGCCCGGGggcGCCGCUc -3'
miRNA:   3'- -GGUGGGCgUCG--------ACGGGCUCa--CGGCGA- -5'
21726 5' -62.7 NC_004812.1 + 78162 0.74 0.215966
Target:  5'- aUCGCCCGCgAGgUGaCCGAGUGCuCGCg -3'
miRNA:   3'- -GGUGGGCG-UCgACgGGCUCACG-GCGa -5'
21726 5' -62.7 NC_004812.1 + 77169 0.74 0.215966
Target:  5'- cCCGCCCGCGGCgGCgCCGuccccGCCGCc -3'
miRNA:   3'- -GGUGGGCGUCGaCG-GGCuca--CGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.