miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 5' -62.7 NC_004812.1 + 126 0.67 0.543844
Target:  5'- cCCGCCCgGgAGCccGCCCGGGaGcCCGCc -3'
miRNA:   3'- -GGUGGG-CgUCGa-CGGGCUCaC-GGCGa -5'
21726 5' -62.7 NC_004812.1 + 152 0.67 0.553402
Target:  5'- gCCGCgCCGCcGC-GCCCGcGgcccGCCGCg -3'
miRNA:   3'- -GGUG-GGCGuCGaCGGGCuCa---CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 446 0.7 0.361603
Target:  5'- gCGCCCGCcGCgaGCCCG-G-GCCGCc -3'
miRNA:   3'- gGUGGGCGuCGa-CGGGCuCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 474 0.7 0.384187
Target:  5'- gCGCCUGCGugcgcacgcgccuGCUGCCCGAacucacgGCCGCc -3'
miRNA:   3'- gGUGGGCGU-------------CGACGGGCUca-----CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 983 0.66 0.57944
Target:  5'- -uGCCCGCccccgaucucacuaGGcCUGCCCGGccgggGCCGCg -3'
miRNA:   3'- ggUGGGCG--------------UC-GACGGGCUca---CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 1064 0.67 0.562046
Target:  5'- cCCGgCCGCGGUcuccuccUGCCCG---GCCGCg -3'
miRNA:   3'- -GGUgGGCGUCG-------ACGGGCucaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 1101 0.66 0.601822
Target:  5'- uCCugCC-CGGCgGCCCGGGUcgcuucGCCGg- -3'
miRNA:   3'- -GGugGGcGUCGaCGGGCUCA------CGGCga -5'
21726 5' -62.7 NC_004812.1 + 1242 0.68 0.478725
Target:  5'- cCCGCCCgggcggcgccGCGGCcGCCCGuuGGUccgccgGCCGCg -3'
miRNA:   3'- -GGUGGG----------CGUCGaCGGGC--UCA------CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 1398 0.66 0.631167
Target:  5'- cCCGCUcuuCGCGGCccgGcCCCGAcGgcgGCCGCg -3'
miRNA:   3'- -GGUGG---GCGUCGa--C-GGGCU-Ca--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 1509 0.66 0.621376
Target:  5'- cCgGCCCGCGccGCcGCgCGAGggcaUGCCGCc -3'
miRNA:   3'- -GgUGGGCGU--CGaCGgGCUC----ACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 1566 0.66 0.611592
Target:  5'- aCGCgCGCgAGCcGCCCGGGUcccccCCGCa -3'
miRNA:   3'- gGUGgGCG-UCGaCGGGCUCAc----GGCGa -5'
21726 5' -62.7 NC_004812.1 + 1687 0.66 0.58235
Target:  5'- cCCGCCCGCGGCgggggaUGCCCua-UGCUGa- -3'
miRNA:   3'- -GGUGGGCGUCG------ACGGGcucACGGCga -5'
21726 5' -62.7 NC_004812.1 + 1898 0.68 0.476919
Target:  5'- cCCGCCCGCGGCaccccguauaugGgCCGAGgcuccgGCCGg- -3'
miRNA:   3'- -GGUGGGCGUCGa-----------CgGGCUCa-----CGGCga -5'
21726 5' -62.7 NC_004812.1 + 2003 0.68 0.506207
Target:  5'- cCCGCCgGCGGUcGCUCGGGgcGCCGaCg -3'
miRNA:   3'- -GGUGGgCGUCGaCGGGCUCa-CGGC-Ga -5'
21726 5' -62.7 NC_004812.1 + 2744 0.66 0.601822
Target:  5'- cCCAUgCGCaacAGCUGCCCGcucugcaacGCCGCc -3'
miRNA:   3'- -GGUGgGCG---UCGACGGGCuca------CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 3204 0.68 0.469728
Target:  5'- gCGCggCGCAGCggGCCCGAG-GCgCGCg -3'
miRNA:   3'- gGUGg-GCGUCGa-CGGGCUCaCG-GCGa -5'
21726 5' -62.7 NC_004812.1 + 3258 0.74 0.226328
Target:  5'- gCGCCCGCGcccccGCcGCCCGAGgagacGCCGCc -3'
miRNA:   3'- gGUGGGCGU-----CGaCGGGCUCa----CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 3308 0.71 0.346574
Target:  5'- uCCACCCGaggaggAGCcaggggagggGCCCGAGggGCCGCc -3'
miRNA:   3'- -GGUGGGCg-----UCGa---------CGGGCUCa-CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 3406 0.68 0.496969
Target:  5'- gCCGCCCGCcuccccccGGCgGCCCuccGGcGCCGCc -3'
miRNA:   3'- -GGUGGGCG--------UCGaCGGGc--UCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 3511 0.67 0.57266
Target:  5'- -gGCCCGgGGCcggcgGcCCCGGGggcgggGCCGCg -3'
miRNA:   3'- ggUGGGCgUCGa----C-GGGCUCa-----CGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.