miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 5' -62.7 NC_004812.1 + 8497 0.72 0.278248
Target:  5'- gCgGCCgGCGGCcGCCCGAGccgGCUGCc -3'
miRNA:   3'- -GgUGGgCGUCGaCGGGCUCa--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 152723 0.74 0.231665
Target:  5'- gCGCCCGCgccucuGGCUGCgCGAGcugcGCCGCa -3'
miRNA:   3'- gGUGGGCG------UCGACGgGCUCa---CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 124441 0.74 0.237108
Target:  5'- cCCGCCCGCGGCcgGCggaccaaCGGGcgGCCGCg -3'
miRNA:   3'- -GGUGGGCGUCGa-CGg------GCUCa-CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 7905 0.73 0.242658
Target:  5'- gUCGCCCGCAGgUGUCgGGG-GCUGCg -3'
miRNA:   3'- -GGUGGGCGUCgACGGgCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 96525 0.73 0.254081
Target:  5'- gCACCCGgGGCUcGCCCGcGUgcgcuccgcccuGCCGCUg -3'
miRNA:   3'- gGUGGGCgUCGA-CGGGCuCA------------CGGCGA- -5'
21726 5' -62.7 NC_004812.1 + 91903 0.73 0.259957
Target:  5'- -aGCCCGCGGggGCCCuGAGggcccGCCGCUu -3'
miRNA:   3'- ggUGGGCGUCgaCGGG-CUCa----CGGCGA- -5'
21726 5' -62.7 NC_004812.1 + 136436 0.73 0.259957
Target:  5'- cCCGCUCGCccgGGUcgggGCCCGAGcGCCGCc -3'
miRNA:   3'- -GGUGGGCG---UCGa---CGGGCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 143713 0.73 0.265943
Target:  5'- gCCGCCC-CGGggGCaCCGAGcGCCGCUg -3'
miRNA:   3'- -GGUGGGcGUCgaCG-GGCUCaCGGCGA- -5'
21726 5' -62.7 NC_004812.1 + 68393 0.73 0.27204
Target:  5'- gCCGCCCaGCcGCcGUCCGGG-GCCGCg -3'
miRNA:   3'- -GGUGGG-CGuCGaCGGGCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 86594 0.74 0.226328
Target:  5'- cCCGCCCGCGGCgggGCCauGGUGUCGa- -3'
miRNA:   3'- -GGUGGGCGUCGa--CGGgcUCACGGCga -5'
21726 5' -62.7 NC_004812.1 + 3258 0.74 0.226328
Target:  5'- gCGCCCGCGcccccGCcGCCCGAGgagacGCCGCc -3'
miRNA:   3'- gGUGGGCGU-----CGaCGGGCUCa----CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 97564 0.74 0.221095
Target:  5'- uCCGCCCGUGGC-GCCCuGGGgcUGCCGUa -3'
miRNA:   3'- -GGUGGGCGUCGaCGGG-CUC--ACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 49194 0.76 0.15813
Target:  5'- aCCGCCUGCAGCUGggcaugcucauCCCGggggcGGUGCCGUc -3'
miRNA:   3'- -GGUGGGCGUCGAC-----------GGGC-----UCACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 30181 0.76 0.16203
Target:  5'- gCCGCgCGCGGCUGCCUGGGggGCacaGCUc -3'
miRNA:   3'- -GGUGgGCGUCGACGGGCUCa-CGg--CGA- -5'
21726 5' -62.7 NC_004812.1 + 24546 0.76 0.166017
Target:  5'- aCCACCCGCAGCU-CCgGGGagauguagaaguUGCCGCc -3'
miRNA:   3'- -GGUGGGCGUCGAcGGgCUC------------ACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 75531 0.75 0.178509
Target:  5'- uCCGCCCGCAGC-GCgUCGAGgcgGUCGCa -3'
miRNA:   3'- -GGUGGGCGUCGaCG-GGCUCa--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 153172 0.75 0.178509
Target:  5'- aCC-CCCGCGGCggcugGCgCCGcGUGCCGCc -3'
miRNA:   3'- -GGuGGGCGUCGa----CG-GGCuCACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 119392 0.74 0.206013
Target:  5'- cCUGCCCGgGGCcccccgcgUGCCCGGGggcGCCGCUc -3'
miRNA:   3'- -GGUGGGCgUCG--------ACGGGCUCa--CGGCGA- -5'
21726 5' -62.7 NC_004812.1 + 77169 0.74 0.215966
Target:  5'- cCCGCCCGCGGCgGCgCCGuccccGCCGCc -3'
miRNA:   3'- -GGUGGGCGUCGaCG-GGCuca--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 15086 0.74 0.221095
Target:  5'- gCCGCCCGcCGGCUcgaGCCCGAGcGCCugguGCg -3'
miRNA:   3'- -GGUGGGC-GUCGA---CGGGCUCaCGG----CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.