miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21727 3' -64 NC_004812.1 + 102402 0.66 0.537315
Target:  5'- gACGGaagcGCCCg---CGgGCGGCGUCUCa -3'
miRNA:   3'- -UGCC----UGGGacgaGCgCGCCGCAGGGa -5'
21727 3' -64 NC_004812.1 + 135967 0.66 0.584841
Target:  5'- -gGGAgCCUGCUCucggaggaggcgGUGCGGCGcgugacggacgCCCUg -3'
miRNA:   3'- ugCCUgGGACGAG------------CGCGCCGCa----------GGGA- -5'
21727 3' -64 NC_004812.1 + 51855 0.66 0.563795
Target:  5'- cCGGACCCacagGC-CGgGCGGCGgggcgaauuucgCCCc -3'
miRNA:   3'- uGCCUGGGa---CGaGCgCGCCGCa-----------GGGa -5'
21727 3' -64 NC_004812.1 + 8072 0.66 0.556191
Target:  5'- cCGcGACCCcGC-CGCGCccGGCGgCCCg -3'
miRNA:   3'- uGC-CUGGGaCGaGCGCG--CCGCaGGGa -5'
21727 3' -64 NC_004812.1 + 155271 0.66 0.542956
Target:  5'- gGCGGACgCCaaaccggggagggGCgggGCGCGGCGgggCCCg -3'
miRNA:   3'- -UGCCUG-GGa------------CGag-CGCGCCGCa--GGGa -5'
21727 3' -64 NC_004812.1 + 110518 0.66 0.536377
Target:  5'- uGCGGGCgCCUGCU-GC-CGGUcuucgugGUCCCg -3'
miRNA:   3'- -UGCCUG-GGACGAgCGcGCCG-------CAGGGa -5'
21727 3' -64 NC_004812.1 + 38361 0.66 0.556191
Target:  5'- -aGGAacuccUCCUGCaggCGgGCGGCGgggCCCg -3'
miRNA:   3'- ugCCU-----GGGACGa--GCgCGCCGCa--GGGa -5'
21727 3' -64 NC_004812.1 + 6217 0.66 0.537315
Target:  5'- cGCGGAcgccgcCCCUGC-CGcCGCGGC--CCCg -3'
miRNA:   3'- -UGCCU------GGGACGaGC-GCGCCGcaGGGa -5'
21727 3' -64 NC_004812.1 + 117370 0.66 0.556191
Target:  5'- gGCGGccgcGCCCgGCa-GCGCGGCGgcggcgccggCCCg -3'
miRNA:   3'- -UGCC----UGGGaCGagCGCGCCGCa---------GGGa -5'
21727 3' -64 NC_004812.1 + 147804 0.66 0.556191
Target:  5'- uCGGGgCUggcgagGCUCGCGUGGU-UCCCUc -3'
miRNA:   3'- uGCCUgGGa-----CGAGCGCGCCGcAGGGA- -5'
21727 3' -64 NC_004812.1 + 96 0.66 0.565701
Target:  5'- gACGGGCCgggGCgCGCGCGGgGccgggagCCCg -3'
miRNA:   3'- -UGCCUGGga-CGaGCGCGCCgCa------GGGa -5'
21727 3' -64 NC_004812.1 + 156506 0.66 0.565701
Target:  5'- gACGGGCCgggGCgCGCGCGGgGccgggagCCCg -3'
miRNA:   3'- -UGCCUGGga-CGaGCGCGCCgCa------GGGa -5'
21727 3' -64 NC_004812.1 + 75916 0.66 0.546727
Target:  5'- cGCGaGGgCCUGCUCgGCGCGcuuGCGgaagUCCCg -3'
miRNA:   3'- -UGC-CUgGGACGAG-CGCGC---CGC----AGGGa -5'
21727 3' -64 NC_004812.1 + 111130 0.66 0.537315
Target:  5'- cCGGGCCgccgccaUGCUCGC-CGuGCGcUCCCUc -3'
miRNA:   3'- uGCCUGGg------ACGAGCGcGC-CGC-AGGGA- -5'
21727 3' -64 NC_004812.1 + 47202 0.66 0.537315
Target:  5'- gUGGACCUgggg-GCGCGGCGcCCCg -3'
miRNA:   3'- uGCCUGGGacgagCGCGCCGCaGGGa -5'
21727 3' -64 NC_004812.1 + 129136 0.66 0.546727
Target:  5'- uGCGcGCCg-GCgggCGCGCGGCGccgCCCg -3'
miRNA:   3'- -UGCcUGGgaCGa--GCGCGCCGCa--GGGa -5'
21727 3' -64 NC_004812.1 + 108399 0.66 0.571427
Target:  5'- -gGGGCUCcGCUCGCGCcGGCGcacguggcgcggaCCCUc -3'
miRNA:   3'- ugCCUGGGaCGAGCGCG-CCGCa------------GGGA- -5'
21727 3' -64 NC_004812.1 + 156053 0.66 0.537315
Target:  5'- gACGGGCgg-GCgUCGCGCGGCGcgUCgCCg -3'
miRNA:   3'- -UGCCUGggaCG-AGCGCGCCGC--AG-GGa -5'
21727 3' -64 NC_004812.1 + 32662 0.66 0.564748
Target:  5'- cCGGGCUggGCUCGCGCGGgaggaggccgggcCGgCCCg -3'
miRNA:   3'- uGCCUGGgaCGAGCGCGCC-------------GCaGGGa -5'
21727 3' -64 NC_004812.1 + 71053 0.66 0.569517
Target:  5'- gGCGGccgcCCCUGCggcgguucgggcggCGCGgGGCGUUCg- -3'
miRNA:   3'- -UGCCu---GGGACGa-------------GCGCgCCGCAGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.