miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21727 3' -64 NC_004812.1 + 110915 0.7 0.358209
Target:  5'- cCGGGCCCUGCU-GCaGCuGGUgccGUCCCg -3'
miRNA:   3'- uGCCUGGGACGAgCG-CG-CCG---CAGGGa -5'
21727 3' -64 NC_004812.1 + 113471 0.71 0.31526
Target:  5'- cGCGGACCCUGCgggagugCGUGCuGCG-CCa- -3'
miRNA:   3'- -UGCCUGGGACGa------GCGCGcCGCaGGga -5'
21727 3' -64 NC_004812.1 + 72196 0.71 0.31526
Target:  5'- -gGGGCCCcggGUcgUCGCGgGGCGUCCg- -3'
miRNA:   3'- ugCCUGGGa--CG--AGCGCgCCGCAGGga -5'
21727 3' -64 NC_004812.1 + 149154 0.7 0.32214
Target:  5'- cGCGGuCCCcGCggaggCGagggGCGGCGUCCCc -3'
miRNA:   3'- -UGCCuGGGaCGa----GCg---CGCCGCAGGGa -5'
21727 3' -64 NC_004812.1 + 73221 0.7 0.329131
Target:  5'- cGCGGccGCCCUGCgggUCGgGCGGgCGgCCCg -3'
miRNA:   3'- -UGCC--UGGGACG---AGCgCGCC-GCaGGGa -5'
21727 3' -64 NC_004812.1 + 25356 0.7 0.336234
Target:  5'- gGCGGcgACCacggGCUCGC-CGGCGUCCg- -3'
miRNA:   3'- -UGCC--UGGga--CGAGCGcGCCGCAGGga -5'
21727 3' -64 NC_004812.1 + 121571 0.7 0.336234
Target:  5'- uCGGcCCCUGCUCgGCGgGGCGggggCCg- -3'
miRNA:   3'- uGCCuGGGACGAG-CGCgCCGCa---GGga -5'
21727 3' -64 NC_004812.1 + 39408 0.7 0.343448
Target:  5'- gGCGGugCgUGC-CGaCGCGG-GUCCCg -3'
miRNA:   3'- -UGCCugGgACGaGC-GCGCCgCAGGGa -5'
21727 3' -64 NC_004812.1 + 71922 0.7 0.346365
Target:  5'- cGCGGGCgCUGCagcggcgaggacggCGCGgGGCGgCCCUg -3'
miRNA:   3'- -UGCCUGgGACGa-------------GCGCgCCGCaGGGA- -5'
21727 3' -64 NC_004812.1 + 111796 0.71 0.295288
Target:  5'- uGCGaGAUUCUGCUgCGCGUGGCGagCCa -3'
miRNA:   3'- -UGC-CUGGGACGA-GCGCGCCGCagGGa -5'
21727 3' -64 NC_004812.1 + 76054 0.71 0.288853
Target:  5'- gGCGG-CCCagcGCUCGCGgccggcgcgGGCGUCCCg -3'
miRNA:   3'- -UGCCuGGGa--CGAGCGCg--------CCGCAGGGa -5'
21727 3' -64 NC_004812.1 + 137868 0.72 0.263623
Target:  5'- cCGGGCCCUcaccuucGauggCGCGCGGCGcCCCa -3'
miRNA:   3'- uGCCUGGGA-------Cga--GCGCGCCGCaGGGa -5'
21727 3' -64 NC_004812.1 + 127870 0.79 0.083099
Target:  5'- uCGGGCCCgGCgCGCGCGGCGUCgCg -3'
miRNA:   3'- uGCCUGGGaCGaGCGCGCCGCAGgGa -5'
21727 3' -64 NC_004812.1 + 100681 0.76 0.139951
Target:  5'- uCGGGCCCggcGCUCGCGCGgGCGUgUCg -3'
miRNA:   3'- uGCCUGGGa--CGAGCGCGC-CGCAgGGa -5'
21727 3' -64 NC_004812.1 + 18801 0.75 0.173915
Target:  5'- -gGGGgCCUGCUC-CGCGGCG-CCCUc -3'
miRNA:   3'- ugCCUgGGACGAGcGCGCCGCaGGGA- -5'
21727 3' -64 NC_004812.1 + 122840 0.72 0.241312
Target:  5'- gGCGGugCCgGCgCGCaCGGCGUCCUc -3'
miRNA:   3'- -UGCCugGGaCGaGCGcGCCGCAGGGa -5'
21727 3' -64 NC_004812.1 + 128722 0.72 0.241312
Target:  5'- aGCGGGCCCgaggCGCGCGGCGgCCg- -3'
miRNA:   3'- -UGCCUGGGacgaGCGCGCCGCaGGga -5'
21727 3' -64 NC_004812.1 + 130277 0.72 0.241312
Target:  5'- cCGGGCCacgGCUCGcCGCuGGCGUaCCCg -3'
miRNA:   3'- uGCCUGGga-CGAGC-GCG-CCGCA-GGGa -5'
21727 3' -64 NC_004812.1 + 18563 0.72 0.245756
Target:  5'- cGCGGGCCC-GCUccgccgccgccgcCGCcgcacccgcgccgGCGGCGUCCCg -3'
miRNA:   3'- -UGCCUGGGaCGA-------------GCG-------------CGCCGCAGGGa -5'
21727 3' -64 NC_004812.1 + 120194 0.72 0.25255
Target:  5'- cCGuGuCCCUGCU-GCGCGGCG-CCCg -3'
miRNA:   3'- uGC-CuGGGACGAgCGCGCCGCaGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.