miRNA display CGI


Results 1 - 20 of 192 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21727 3' -64 NC_004812.1 + 93 0.66 0.584841
Target:  5'- gGCGGGCUCccgGCccCGCGCGcGCcccggcccGUCCCUc -3'
miRNA:   3'- -UGCCUGGGa--CGa-GCGCGC-CG--------CAGGGA- -5'
21727 3' -64 NC_004812.1 + 96 0.66 0.565701
Target:  5'- gACGGGCCgggGCgCGCGCGGgGccgggagCCCg -3'
miRNA:   3'- -UGCCUGGga-CGaGCGCGCCgCa------GGGa -5'
21727 3' -64 NC_004812.1 + 223 0.68 0.464415
Target:  5'- -gGGGCCCaagGCUCcCGCGGgG-CCCa -3'
miRNA:   3'- ugCCUGGGa--CGAGcGCGCCgCaGGGa -5'
21727 3' -64 NC_004812.1 + 419 0.67 0.48578
Target:  5'- aGCGGcCCCcucccccccuccccuUcCUCGCGCGGCcccgGUCCCg -3'
miRNA:   3'- -UGCCuGGG---------------AcGAGCGCGCCG----CAGGGa -5'
21727 3' -64 NC_004812.1 + 1034 0.66 0.575253
Target:  5'- -aGGGCCCggccGCcCGCGCG-CGcCCCUc -3'
miRNA:   3'- ugCCUGGGa---CGaGCGCGCcGCaGGGA- -5'
21727 3' -64 NC_004812.1 + 1627 0.68 0.421557
Target:  5'- -gGGACCgUGC--GCGCGG-GUCCCg -3'
miRNA:   3'- ugCCUGGgACGagCGCGCCgCAGGGa -5'
21727 3' -64 NC_004812.1 + 2150 0.68 0.438418
Target:  5'- cGCGGGCgggGCUCGCgGCGGCGgccaCCUc -3'
miRNA:   3'- -UGCCUGggaCGAGCG-CGCCGCag--GGA- -5'
21727 3' -64 NC_004812.1 + 2362 0.79 0.083099
Target:  5'- uCGGGCCCgGCgCGCGCGGCGUCgCg -3'
miRNA:   3'- uGCCUGGGaCGaGCGCGCCGCAGgGa -5'
21727 3' -64 NC_004812.1 + 3213 0.73 0.210083
Target:  5'- aGCGGGCCCgaggCGCGCGGCGggCCg -3'
miRNA:   3'- -UGCCUGGGacgaGCGCGCCGCagGGa -5'
21727 3' -64 NC_004812.1 + 3628 0.66 0.546727
Target:  5'- uGCGcGCCg-GCgggCGCGCGGCGccgCCCg -3'
miRNA:   3'- -UGCcUGGgaCGa--GCGCGCCGCa--GGGa -5'
21727 3' -64 NC_004812.1 + 4255 0.68 0.455659
Target:  5'- gGCGGcGCCC-GC-CGCgGCGGCGUUCUc -3'
miRNA:   3'- -UGCC-UGGGaCGaGCG-CGCCGCAGGGa -5'
21727 3' -64 NC_004812.1 + 4769 0.72 0.241312
Target:  5'- cCGGGCCacgGCUCGcCGCuGGCGUaCCCg -3'
miRNA:   3'- uGCCUGGga-CGAGC-GCG-CCGCA-GGGa -5'
21727 3' -64 NC_004812.1 + 5678 0.68 0.429939
Target:  5'- uCGGAgUCCUGCgcgaacgcCGCGCGGCgGUCuCCg -3'
miRNA:   3'- uGCCU-GGGACGa-------GCGCGCCG-CAG-GGa -5'
21727 3' -64 NC_004812.1 + 5826 0.69 0.397013
Target:  5'- gGCGGGCUCUGCggGCcgGCGGCGcgCUCg -3'
miRNA:   3'- -UGCCUGGGACGagCG--CGCCGCa-GGGa -5'
21727 3' -64 NC_004812.1 + 5985 0.66 0.559989
Target:  5'- uAUGGGCCCacgccccggaacgcGCgucggCGCGCGGCGgcgccgCCCc -3'
miRNA:   3'- -UGCCUGGGa-------------CGa----GCGCGCCGCa-----GGGa -5'
21727 3' -64 NC_004812.1 + 6217 0.66 0.537315
Target:  5'- cGCGGAcgccgcCCCUGC-CGcCGCGGC--CCCg -3'
miRNA:   3'- -UGCCU------GGGACGaGC-GCGCCGcaGGGa -5'
21727 3' -64 NC_004812.1 + 8072 0.66 0.556191
Target:  5'- cCGcGACCCcGC-CGCGCccGGCGgCCCg -3'
miRNA:   3'- uGC-CUGGGaCGaGCGCG--CCGCaGGGa -5'
21727 3' -64 NC_004812.1 + 9768 0.69 0.397013
Target:  5'- cGCGGcGCgCCggcgGC-CGCGCgGGUGUCCCg -3'
miRNA:   3'- -UGCC-UG-GGa---CGaGCGCG-CCGCAGGGa -5'
21727 3' -64 NC_004812.1 + 14577 0.67 0.491194
Target:  5'- gGCaGGCCCgcggGCgucuccaGCGCGGCcacGUCCCg -3'
miRNA:   3'- -UGcCUGGGa---CGag-----CGCGCCG---CAGGGa -5'
21727 3' -64 NC_004812.1 + 16209 0.69 0.413274
Target:  5'- gGCGGACCCggGCcgCGCGCcggaGGCGgagCCg- -3'
miRNA:   3'- -UGCCUGGGa-CGa-GCGCG----CCGCa--GGga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.