miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21727 3' -64 NC_004812.1 + 145011 1.06 0.001042
Target:  5'- uACGGACCCUGCUCGCGCGGCGUCCCUc -3'
miRNA:   3'- -UGCCUGGGACGAGCGCGCCGCAGGGA- -5'
21727 3' -64 NC_004812.1 + 72834 0.8 0.078614
Target:  5'- gACGGGCCgCUGCagucgcugugggCGCGCuGGCGUCCCUg -3'
miRNA:   3'- -UGCCUGG-GACGa-----------GCGCG-CCGCAGGGA- -5'
21727 3' -64 NC_004812.1 + 127870 0.79 0.083099
Target:  5'- uCGGGCCCgGCgCGCGCGGCGUCgCg -3'
miRNA:   3'- uGCCUGGGaCGaGCGCGCCGCAGgGa -5'
21727 3' -64 NC_004812.1 + 2362 0.79 0.083099
Target:  5'- uCGGGCCCgGCgCGCGCGGCGUCgCg -3'
miRNA:   3'- uGCCUGGGaCGaGCGCGCCGCAGgGa -5'
21727 3' -64 NC_004812.1 + 51269 0.76 0.136577
Target:  5'- cCGGGCCCUcgUCGCGCgagcauGGCGUCCCg -3'
miRNA:   3'- uGCCUGGGAcgAGCGCG------CCGCAGGGa -5'
21727 3' -64 NC_004812.1 + 100681 0.76 0.139951
Target:  5'- uCGGGCCCggcGCUCGCGCGgGCGUgUCg -3'
miRNA:   3'- uGCCUGGGa--CGAGCGCGC-CGCAgGGa -5'
21727 3' -64 NC_004812.1 + 89213 0.76 0.14693
Target:  5'- -gGGGCCCcgGCUcCGCGCGGCGgcggaggCCCg -3'
miRNA:   3'- ugCCUGGGa-CGA-GCGCGCCGCa------GGGa -5'
21727 3' -64 NC_004812.1 + 124241 0.75 0.154225
Target:  5'- gGCGGGCCUggcgggggGCgCGCGCGGCGgcgCCCc -3'
miRNA:   3'- -UGCCUGGGa-------CGaGCGCGCCGCa--GGGa -5'
21727 3' -64 NC_004812.1 + 95176 0.75 0.161846
Target:  5'- gGCGGGCCCUcagacgGCcggggCGCGCGG-GUCCCUc -3'
miRNA:   3'- -UGCCUGGGA------CGa----GCGCGCCgCAGGGA- -5'
21727 3' -64 NC_004812.1 + 18801 0.75 0.173915
Target:  5'- -gGGGgCCUGCUC-CGCGGCG-CCCUc -3'
miRNA:   3'- ugCCUgGGACGAGcGCGCCGCaGGGA- -5'
21727 3' -64 NC_004812.1 + 133556 0.74 0.200474
Target:  5'- uGCGGGCCgCggcgucgaGCUCG-GCGGCGUCCUg -3'
miRNA:   3'- -UGCCUGG-Ga-------CGAGCgCGCCGCAGGGa -5'
21727 3' -64 NC_004812.1 + 91194 0.73 0.210083
Target:  5'- cGCGGGCUCggggGCgggggGCGCGGCGUCCa- -3'
miRNA:   3'- -UGCCUGGGa---CGag---CGCGCCGCAGGga -5'
21727 3' -64 NC_004812.1 + 17773 0.73 0.210083
Target:  5'- -gGGGUCCUGCggggacaCGCaGCGGCGUCCCUc -3'
miRNA:   3'- ugCCUGGGACGa------GCG-CGCCGCAGGGA- -5'
21727 3' -64 NC_004812.1 + 3213 0.73 0.210083
Target:  5'- aGCGGGCCCgaggCGCGCGGCGggCCg -3'
miRNA:   3'- -UGCCUGGGacgaGCGCGCCGCagGGa -5'
21727 3' -64 NC_004812.1 + 78825 0.73 0.225238
Target:  5'- aGCGGGcCCCUGaccgUGCgGCGGUGUCCCc -3'
miRNA:   3'- -UGCCU-GGGACga--GCG-CGCCGCAGGGa -5'
21727 3' -64 NC_004812.1 + 116209 0.73 0.225238
Target:  5'- uACGcGGCCUgGCUCGCGCGGgCgGUCCUg -3'
miRNA:   3'- -UGC-CUGGGaCGAGCGCGCC-G-CAGGGa -5'
21727 3' -64 NC_004812.1 + 50118 0.73 0.231024
Target:  5'- cGCGGACCCgcgccccagccacggGUUCGCGUGGgGggcgCCCg -3'
miRNA:   3'- -UGCCUGGGa--------------CGAGCGCGCCgCa---GGGa -5'
21727 3' -64 NC_004812.1 + 130277 0.72 0.241312
Target:  5'- cCGGGCCacgGCUCGcCGCuGGCGUaCCCg -3'
miRNA:   3'- uGCCUGGga-CGAGC-GCG-CCGCA-GGGa -5'
21727 3' -64 NC_004812.1 + 128722 0.72 0.241312
Target:  5'- aGCGGGCCCgaggCGCGCGGCGgCCg- -3'
miRNA:   3'- -UGCCUGGGacgaGCGCGCCGCaGGga -5'
21727 3' -64 NC_004812.1 + 122840 0.72 0.241312
Target:  5'- gGCGGugCCgGCgCGCaCGGCGUCCUc -3'
miRNA:   3'- -UGCCugGGaCGaGCGcGCCGCAGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.