miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21727 5' -55.5 NC_004812.1 + 131093 0.66 0.933391
Target:  5'- gCGGCGGC-CCGuCGgcGGggUCCugcGAg -3'
miRNA:   3'- gGUCGCUGcGGC-GCuaCCuuAGGu--CU- -5'
21727 5' -55.5 NC_004812.1 + 7928 0.66 0.942429
Target:  5'- gCGGCGcGCGCCGgcgcggcCGggGGGcgcGUCCGGGg -3'
miRNA:   3'- gGUCGC-UGCGGC-------GCuaCCU---UAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 102320 0.66 0.938253
Target:  5'- uCCGGCGGCuGCugucgCGCGAccGGAAUaaCCGGGg -3'
miRNA:   3'- -GGUCGCUG-CG-----GCGCUa-CCUUA--GGUCU- -5'
21727 5' -55.5 NC_004812.1 + 98495 0.66 0.928294
Target:  5'- -gGGUGGgGCgGCGcgGGGcgCCGGGu -3'
miRNA:   3'- ggUCGCUgCGgCGCuaCCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 95279 0.66 0.928294
Target:  5'- -gGGUGugGgCCGCGGUGGcucUCCAc- -3'
miRNA:   3'- ggUCGCugC-GGCGCUACCuu-AGGUcu -5'
21727 5' -55.5 NC_004812.1 + 25909 0.66 0.938253
Target:  5'- cCCAGCGccgcgggcgcGCGUCGCGA--GAG-CCGGAc -3'
miRNA:   3'- -GGUCGC----------UGCGGCGCUacCUUaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 148928 0.66 0.933391
Target:  5'- uCCGGCGGCGUCGgCGAcgacGGuGGUCgGGGc -3'
miRNA:   3'- -GGUCGCUGCGGC-GCUa---CC-UUAGgUCU- -5'
21727 5' -55.5 NC_004812.1 + 19560 0.66 0.942429
Target:  5'- gUCAGCGACGCgGCcGAcgcgcacUGGGguguGUCCuGGAu -3'
miRNA:   3'- -GGUCGCUGCGgCG-CU-------ACCU----UAGG-UCU- -5'
21727 5' -55.5 NC_004812.1 + 68167 0.66 0.928294
Target:  5'- cCCGGCagggucGGCgGCCGCGGgcgGGGGcgcgCCGGAc -3'
miRNA:   3'- -GGUCG------CUG-CGGCGCUa--CCUUa---GGUCU- -5'
21727 5' -55.5 NC_004812.1 + 153888 0.66 0.922962
Target:  5'- aCCuGCGccGCGCCGUGcUGGccUCCGGc -3'
miRNA:   3'- -GGuCGC--UGCGGCGCuACCuuAGGUCu -5'
21727 5' -55.5 NC_004812.1 + 30494 0.66 0.922962
Target:  5'- gUAGCGGCGCuCGCGGUuGAA--CAGAa -3'
miRNA:   3'- gGUCGCUGCG-GCGCUAcCUUagGUCU- -5'
21727 5' -55.5 NC_004812.1 + 111558 0.66 0.938253
Target:  5'- aCCAGCGGCGCUGCauguucggcGUGGugagcCCGGc -3'
miRNA:   3'- -GGUCGCUGCGGCGc--------UACCuua--GGUCu -5'
21727 5' -55.5 NC_004812.1 + 6304 0.66 0.938253
Target:  5'- -gAGCGGCGCCcccgggcacGCGggGGGccCCGGGc -3'
miRNA:   3'- ggUCGCUGCGG---------CGCuaCCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 48369 0.66 0.932892
Target:  5'- gCC-GCgGACGCCgccgccgggcccgGCGAgcUGGAgGUCCAGAu -3'
miRNA:   3'- -GGuCG-CUGCGG-------------CGCU--ACCU-UAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 121214 0.66 0.928294
Target:  5'- aCAGC-AUGCCGCccaccgGGGucAUCCAGAg -3'
miRNA:   3'- gGUCGcUGCGGCGcua---CCU--UAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 124046 0.66 0.933391
Target:  5'- gCC-GCGGCGCCGCGGccaacgGGGGagCGGc -3'
miRNA:   3'- -GGuCGCUGCGGCGCUa-----CCUUagGUCu -5'
21727 5' -55.5 NC_004812.1 + 155903 0.66 0.938253
Target:  5'- gCCGGCGcccggGCuGCCGCGccgaGGAggCCGGGc -3'
miRNA:   3'- -GGUCGC-----UG-CGGCGCua--CCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 74260 0.66 0.942881
Target:  5'- cUCuGCGAgGCCGCGGgccucacggGGGgcGUCCuGAg -3'
miRNA:   3'- -GGuCGCUgCGGCGCUa--------CCU--UAGGuCU- -5'
21727 5' -55.5 NC_004812.1 + 99811 0.66 0.938253
Target:  5'- gCCAGCuGCGCCGCGcgaacGGcgCCGGu -3'
miRNA:   3'- -GGUCGcUGCGGCGCuac--CUuaGGUCu -5'
21727 5' -55.5 NC_004812.1 + 8236 0.66 0.93239
Target:  5'- cCCGGCGGCcggGCCGgGGguccgcccccggGGGcgCCGGGg -3'
miRNA:   3'- -GGUCGCUG---CGGCgCUa-----------CCUuaGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.