miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21727 5' -55.5 NC_004812.1 + 562 0.67 0.916825
Target:  5'- cCCGGCGcgcGCgGCCGCG-UGGAGccgcgggcgcggcUCCGGu -3'
miRNA:   3'- -GGUCGC---UG-CGGCGCuACCUU-------------AGGUCu -5'
21727 5' -55.5 NC_004812.1 + 838 0.72 0.66368
Target:  5'- uCCGGgGugGCCGgGGguccUGGggUCCuGGg -3'
miRNA:   3'- -GGUCgCugCGGCgCU----ACCuuAGGuCU- -5'
21727 5' -55.5 NC_004812.1 + 881 0.72 0.633264
Target:  5'- uCCGGgGuCGCCGgGGguccugGGggUCCGGGg -3'
miRNA:   3'- -GGUCgCuGCGGCgCUa-----CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 933 0.72 0.633264
Target:  5'- uCCGGgGuCGCCGgGGguccugGGggUCCGGGg -3'
miRNA:   3'- -GGUCgCuGCGGCgCUa-----CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 985 0.72 0.633264
Target:  5'- uCCGGgGuCGCCGgGGUccugGGggUCCGGGg -3'
miRNA:   3'- -GGUCgCuGCGGCgCUA----CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 1219 0.72 0.67378
Target:  5'- -gGGCGGCGCCGCGG-GGGcUCCu-- -3'
miRNA:   3'- ggUCGCUGCGGCGCUaCCUuAGGucu -5'
21727 5' -55.5 NC_004812.1 + 1247 0.7 0.752637
Target:  5'- cCgGGCGGCGCCGCGGccgcccguUGGuccgCCGGc -3'
miRNA:   3'- -GgUCGCUGCGGCGCU--------ACCuua-GGUCu -5'
21727 5' -55.5 NC_004812.1 + 1418 0.68 0.849279
Target:  5'- cCCGaCGGCgGCCGCGG-GGAGgggCCGGGg -3'
miRNA:   3'- -GGUcGCUG-CGGCGCUaCCUUa--GGUCU- -5'
21727 5' -55.5 NC_004812.1 + 2223 0.67 0.899294
Target:  5'- cCCGGCc-CGCCGcCGAggugGGggUCuCGGGg -3'
miRNA:   3'- -GGUCGcuGCGGC-GCUa---CCuuAG-GUCU- -5'
21727 5' -55.5 NC_004812.1 + 2234 0.72 0.683845
Target:  5'- cCCAGCGcacgcgcgGCGCgGCGgcGGggUCCGc- -3'
miRNA:   3'- -GGUCGC--------UGCGgCGCuaCCuuAGGUcu -5'
21727 5' -55.5 NC_004812.1 + 2287 0.74 0.562601
Target:  5'- aCgAGCGGCGCgGCGucGGggUCCGGc -3'
miRNA:   3'- -GgUCGCUGCGgCGCuaCCuuAGGUCu -5'
21727 5' -55.5 NC_004812.1 + 2455 0.7 0.789848
Target:  5'- --uGCGccuCGCCGCGgcGGAaGUCCGGGg -3'
miRNA:   3'- gguCGCu--GCGGCGCuaCCU-UAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 3429 0.67 0.886084
Target:  5'- cCCGGCGGCacgcggcgccaGCCGcCGcgGGggUCgGGc -3'
miRNA:   3'- -GGUCGCUG-----------CGGC-GCuaCCuuAGgUCu -5'
21727 5' -55.5 NC_004812.1 + 3910 0.68 0.849279
Target:  5'- gCGGCGGCGCgGCGgcGGGG-CCGc- -3'
miRNA:   3'- gGUCGCUGCGgCGCuaCCUUaGGUcu -5'
21727 5' -55.5 NC_004812.1 + 4970 0.68 0.87199
Target:  5'- gCCGGCGGCGgCgagGCGggGGcgacgGGUCCGGGu -3'
miRNA:   3'- -GGUCGCUGCgG---CGCuaCC-----UUAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 5043 0.67 0.892801
Target:  5'- -gGGCaGCGCCGCGGUcacgGGGGcCCGGGc -3'
miRNA:   3'- ggUCGcUGCGGCGCUA----CCUUaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 5098 0.68 0.864624
Target:  5'- gCCGGgGAgGCgGgGGagucUGGggUCCGGGg -3'
miRNA:   3'- -GGUCgCUgCGgCgCU----ACCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 5410 0.73 0.612969
Target:  5'- cCCAGgGACGCgGCGGgccgGGGGccccCCAGAg -3'
miRNA:   3'- -GGUCgCUGCGgCGCUa---CCUUa---GGUCU- -5'
21727 5' -55.5 NC_004812.1 + 5503 0.68 0.857052
Target:  5'- gCGGCGGCgGCCGCGG-GGAaggcGUCCc-- -3'
miRNA:   3'- gGUCGCUG-CGGCGCUaCCU----UAGGucu -5'
21727 5' -55.5 NC_004812.1 + 5585 0.66 0.933391
Target:  5'- gCGGCGGC-CCGuCGgcGGggUCCugcGAg -3'
miRNA:   3'- gGUCGCUGcGGC-GCuaCCuuAGGu--CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.