miRNA display CGI


Results 1 - 20 of 271 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21727 5' -55.5 NC_004812.1 + 105640 0.72 0.66368
Target:  5'- -aAGgGAgGCCGCGGaggcUGGcGUCCAGAg -3'
miRNA:   3'- ggUCgCUgCGGCGCU----ACCuUAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 881 0.72 0.633264
Target:  5'- uCCGGgGuCGCCGgGGguccugGGggUCCGGGg -3'
miRNA:   3'- -GGUCgCuGCGGCgCUa-----CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 933 0.72 0.633264
Target:  5'- uCCGGgGuCGCCGgGGguccugGGggUCCGGGg -3'
miRNA:   3'- -GGUCgCuGCGGCgCUa-----CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 985 0.72 0.633264
Target:  5'- uCCGGgGuCGCCGgGGUccugGGggUCCGGGg -3'
miRNA:   3'- -GGUCgCuGCGGCgCUA----CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 149022 0.72 0.633264
Target:  5'- gCGGCGGCGCCggcuuuaugccgGCGGUGGGggCgGGAc -3'
miRNA:   3'- gGUCGCUGCGG------------CGCUACCUuaGgUCU- -5'
21727 5' -55.5 NC_004812.1 + 104770 0.72 0.643414
Target:  5'- cCCGGCGACGCgG----GGggUCCAGGg -3'
miRNA:   3'- -GGUCGCUGCGgCgcuaCCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 77377 0.72 0.647472
Target:  5'- cCCAGCGACGCCaGCcaggcggccaggucgGcgGGGGccUCCAGGu -3'
miRNA:   3'- -GGUCGCUGCGG-CG---------------CuaCCUU--AGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 99273 0.72 0.653555
Target:  5'- aCCGGCGGC-CCGU---GGggUCCAGGc -3'
miRNA:   3'- -GGUCGCUGcGGCGcuaCCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 838 0.72 0.66368
Target:  5'- uCCGGgGugGCCGgGGguccUGGggUCCuGGg -3'
miRNA:   3'- -GGUCgCugCGGCgCU----ACCuuAGGuCU- -5'
21727 5' -55.5 NC_004812.1 + 5410 0.73 0.612969
Target:  5'- cCCAGgGACGCgGCGGgccgGGGGccccCCAGAg -3'
miRNA:   3'- -GGUCgCUGCGgCGCUa---CCUUa---GGUCU- -5'
21727 5' -55.5 NC_004812.1 + 66076 0.73 0.612969
Target:  5'- gCAuGUGGcCGCCGUaGGUGGggUCCGGGu -3'
miRNA:   3'- gGU-CGCU-GCGGCG-CUACCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 83789 0.73 0.602839
Target:  5'- gCAGCGGC-CCGuCGGUGGggUgaCCGGGg -3'
miRNA:   3'- gGUCGCUGcGGC-GCUACCuuA--GGUCU- -5'
21727 5' -55.5 NC_004812.1 + 54601 0.76 0.466074
Target:  5'- gUCGGCGugGCCGCGGggacgggcGGGG-CCGGAg -3'
miRNA:   3'- -GGUCGCugCGGCGCUa-------CCUUaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 78135 0.75 0.475366
Target:  5'- gCCAGCGccagGCGCCccaCGAUGGAccccucGUCCAGGa -3'
miRNA:   3'- -GGUCGC----UGCGGc--GCUACCU------UAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 121741 0.75 0.475366
Target:  5'- gCCGGCG-CGCgGCGggGGGcgCCGGGc -3'
miRNA:   3'- -GGUCGCuGCGgCGCuaCCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 8371 0.74 0.523121
Target:  5'- gUCGGCGGcCGCCGgGGcccGGggUCCGGGg -3'
miRNA:   3'- -GGUCGCU-GCGGCgCUa--CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 75572 0.74 0.532899
Target:  5'- cUCGGCGugGCCGCGgcGGAAgaaCGGc -3'
miRNA:   3'- -GGUCGCugCGGCGCuaCCUUag-GUCu -5'
21727 5' -55.5 NC_004812.1 + 147490 0.74 0.532899
Target:  5'- aCC-GUGGCGCCGCG--GGggUCCGGu -3'
miRNA:   3'- -GGuCGCUGCGGCGCuaCCuuAGGUCu -5'
21727 5' -55.5 NC_004812.1 + 127795 0.74 0.562601
Target:  5'- aCgAGCGGCGCgGCGucGGggUCCGGc -3'
miRNA:   3'- -GgUCGCUGCGgCGCuaCCuuAGGUCu -5'
21727 5' -55.5 NC_004812.1 + 39108 0.73 0.58265
Target:  5'- aCGGCcGCGUCGCGGUGGucagGUCCAcGAg -3'
miRNA:   3'- gGUCGcUGCGGCGCUACCu---UAGGU-CU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.