miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21727 5' -55.5 NC_004812.1 + 145050 1.11 0.002729
Target:  5'- cCCAGCGACGCCGCGAUGGAAUCCAGAg -3'
miRNA:   3'- -GGUCGCUGCGGCGCUACCUUAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 58763 0.8 0.287605
Target:  5'- gCCGGCGGCGCCcggcgagcgagggcGCGGUGGGcuuUCCGGGc -3'
miRNA:   3'- -GGUCGCUGCGG--------------CGCUACCUu--AGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 61875 0.78 0.354115
Target:  5'- cCCGGCGACcagaaagGUgGCGAggGGGAUCCAGAu -3'
miRNA:   3'- -GGUCGCUG-------CGgCGCUa-CCUUAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 81172 0.76 0.43878
Target:  5'- gCGGCGAcccggcCGCCGCGgcGGAgcugGUCCGGAc -3'
miRNA:   3'- gGUCGCU------GCGGCGCuaCCU----UAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 54601 0.76 0.466074
Target:  5'- gUCGGCGugGCCGCGGggacgggcGGGG-CCGGAg -3'
miRNA:   3'- -GGUCGCugCGGCGCUa-------CCUUaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 17480 0.76 0.466074
Target:  5'- gCGGCgGAUGCCGCGGUGGcgcucCCGGAc -3'
miRNA:   3'- gGUCG-CUGCGGCGCUACCuua--GGUCU- -5'
21727 5' -55.5 NC_004812.1 + 62388 0.76 0.466074
Target:  5'- gCCGGCGACGCCGgCGA-GGAG--CAGAc -3'
miRNA:   3'- -GGUCGCUGCGGC-GCUaCCUUagGUCU- -5'
21727 5' -55.5 NC_004812.1 + 121741 0.75 0.475366
Target:  5'- gCCGGCG-CGCgGCGggGGGcgCCGGGc -3'
miRNA:   3'- -GGUCGCuGCGgCGCuaCCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 78135 0.75 0.475366
Target:  5'- gCCAGCGccagGCGCCccaCGAUGGAccccucGUCCAGGa -3'
miRNA:   3'- -GGUCGC----UGCGGc--GCUACCU------UAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 39272 0.74 0.523121
Target:  5'- gUCGGCGGcCGCCGgGGcccGGggUCCGGGg -3'
miRNA:   3'- -GGUCGCU-GCGGCgCUa--CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 8371 0.74 0.523121
Target:  5'- gUCGGCGGcCGCCGgGGcccGGggUCCGGGg -3'
miRNA:   3'- -GGUCGCU-GCGGCgCUa--CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 29929 0.74 0.532899
Target:  5'- aCGGCGACGgCGCGAgggagcgGGGggCCGGGc -3'
miRNA:   3'- gGUCGCUGCgGCGCUa------CCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 147490 0.74 0.532899
Target:  5'- aCC-GUGGCGCCGCG--GGggUCCGGu -3'
miRNA:   3'- -GGuCGCUGCGGCGCuaCCuuAGGUCu -5'
21727 5' -55.5 NC_004812.1 + 75572 0.74 0.532899
Target:  5'- cUCGGCGugGCCGCGgcGGAAgaaCGGc -3'
miRNA:   3'- -GGUCGCugCGGCGCuaCCUUag-GUCu -5'
21727 5' -55.5 NC_004812.1 + 75637 0.74 0.552645
Target:  5'- aCCAGCG-CGCCGCGgcGG--UCCgAGAg -3'
miRNA:   3'- -GGUCGCuGCGGCGCuaCCuuAGG-UCU- -5'
21727 5' -55.5 NC_004812.1 + 2287 0.74 0.562601
Target:  5'- aCgAGCGGCGCgGCGucGGggUCCGGc -3'
miRNA:   3'- -GgUCGCUGCGgCGCuaCCuuAGGUCu -5'
21727 5' -55.5 NC_004812.1 + 127795 0.74 0.562601
Target:  5'- aCgAGCGGCGCgGCGucGGggUCCGGc -3'
miRNA:   3'- -GgUCGCUGCGgCGCuaCCuuAGGUCu -5'
21727 5' -55.5 NC_004812.1 + 21206 0.73 0.58265
Target:  5'- -aAGCGACGCCggaGCGugcGUGGAAcCCGGAa -3'
miRNA:   3'- ggUCGCUGCGG---CGC---UACCUUaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 39108 0.73 0.58265
Target:  5'- aCGGCcGCGUCGCGGUGGucagGUCCAcGAg -3'
miRNA:   3'- gGUCGcUGCGGCGCUACCu---UAGGU-CU- -5'
21727 5' -55.5 NC_004812.1 + 114739 0.73 0.592731
Target:  5'- uCCAGCGACGCCGgGAg-----CCGGGg -3'
miRNA:   3'- -GGUCGCUGCGGCgCUaccuuaGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.