miRNA display CGI


Results 1 - 20 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 5' -61.3 NC_004812.1 + 101555 0.66 0.725401
Target:  5'- cGCGAGGuuaaaGGcCCCGUGGgggcacggguacaggCaCGCCGGg -3'
miRNA:   3'- -CGCUUCcg---CCuGGGCACCa--------------G-GCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 27769 0.66 0.715107
Target:  5'- cGCaGGGGCGGgcgGCCCa--GcCCGCCGGg -3'
miRNA:   3'- -CGcUUCCGCC---UGGGcacCaGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 32066 0.66 0.715107
Target:  5'- gGCGucGucGCGGGgCCCGUGGggcCCGgccCCGGa -3'
miRNA:   3'- -CGCuuC--CGCCU-GGGCACCa--GGC---GGCC- -5'
21728 5' -61.3 NC_004812.1 + 13015 0.66 0.715107
Target:  5'- cCGGAGGCGG-CCUGa---UCGCCGGg -3'
miRNA:   3'- cGCUUCCGCCuGGGCaccaGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 130898 0.66 0.715107
Target:  5'- cGCGGc-GCGGGgCCGgGGgcgUCGCCGGc -3'
miRNA:   3'- -CGCUucCGCCUgGGCaCCa--GGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 35581 0.66 0.724469
Target:  5'- gGCGgcGGgGGcACCCGacGGcgaCCGCCGa -3'
miRNA:   3'- -CGCuuCCgCC-UGGGCa-CCa--GGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 137807 0.66 0.761131
Target:  5'- gGCGAGGGCGccgcggagcaGGCCCccUGG-CC-CCGGg -3'
miRNA:   3'- -CGCUUCCGC----------CUGGGc-ACCaGGcGGCC- -5'
21728 5' -61.3 NC_004812.1 + 148426 0.66 0.715107
Target:  5'- uGCGggGGCGGAgC-GUGGggUCGCgGu -3'
miRNA:   3'- -CGCuuCCGCCUgGgCACCa-GGCGgCc -5'
21728 5' -61.3 NC_004812.1 + 83236 0.66 0.724469
Target:  5'- aGCGGGauGGgGGACaCCGggggcgagGcGUCgGCCGGg -3'
miRNA:   3'- -CGCUU--CCgCCUG-GGCa-------C-CAGgCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 154860 0.66 0.715107
Target:  5'- uGCGAGGgggcGCGGGCUCG-GG-CCGCgGa -3'
miRNA:   3'- -CGCUUC----CGCCUGGGCaCCaGGCGgCc -5'
21728 5' -61.3 NC_004812.1 + 15748 0.66 0.73376
Target:  5'- cGCGggGGCc-GCCCGcgccGUCaGCCGGg -3'
miRNA:   3'- -CGCuuCCGccUGGGCac--CAGgCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 32676 0.66 0.715107
Target:  5'- cGCGGgaggaggccGGGCcGGCCCG-GGaCCGCgGGc -3'
miRNA:   3'- -CGCU---------UCCGcCUGGGCaCCaGGCGgCC- -5'
21728 5' -61.3 NC_004812.1 + 6190 0.66 0.724469
Target:  5'- cGCGGAGGCccggGGcGCCCGgcGGcCCGCgGa -3'
miRNA:   3'- -CGCUUCCG----CC-UGGGCa-CCaGGCGgCc -5'
21728 5' -61.3 NC_004812.1 + 109705 0.66 0.723536
Target:  5'- cGCGgcGGCGGccgccgcGCCCGaccccGGggCGCUGGg -3'
miRNA:   3'- -CGCuuCCGCC-------UGGGCa----CCagGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 139742 0.66 0.715107
Target:  5'- cGCGAcGGGCcacgccGGuCCCGgGGcCCGcCCGGa -3'
miRNA:   3'- -CGCU-UCCG------CCuGGGCaCCaGGC-GGCC- -5'
21728 5' -61.3 NC_004812.1 + 55079 0.66 0.724469
Target:  5'- cGCGGauauaucgccAGGCGG-CCCGcUGGgugggcguuaUGCCGGa -3'
miRNA:   3'- -CGCU----------UCCGCCuGGGC-ACCag--------GCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 46288 0.66 0.728194
Target:  5'- cGCGGGgcggccggaggccgcGGCGGGCCgCGcGGgcgacagCCGCCGc -3'
miRNA:   3'- -CGCUU---------------CCGCCUGG-GCaCCa------GGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 52920 0.66 0.723536
Target:  5'- cGCGcucGAGGCGGAUCuCGUuGUCCucgcccaGCUGGc -3'
miRNA:   3'- -CGC---UUCCGCCUGG-GCAcCAGG-------CGGCC- -5'
21728 5' -61.3 NC_004812.1 + 151541 0.66 0.715107
Target:  5'- gGCGAcGGCGGGgCCG-GG---GCCGGg -3'
miRNA:   3'- -CGCUuCCGCCUgGGCaCCaggCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 42700 0.66 0.715107
Target:  5'- cGCGGAGcuccuguacGCGGGCCgCGggcGGUUgGCCGcGg -3'
miRNA:   3'- -CGCUUC---------CGCCUGG-GCa--CCAGgCGGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.