miRNA display CGI


Results 1 - 20 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 5' -61.3 NC_004812.1 + 96170 0.74 0.312809
Target:  5'- uCGAGGGCGGcgGCgagGUGGUCgCGCCGGa -3'
miRNA:   3'- cGCUUCCGCC--UGgg-CACCAG-GCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 112242 0.76 0.25061
Target:  5'- cGCGggGGCGGACggggCGUGGUUgGUgGGc -3'
miRNA:   3'- -CGCuuCCGCCUGg---GCACCAGgCGgCC- -5'
21728 5' -61.3 NC_004812.1 + 138719 0.75 0.274179
Target:  5'- cGCGGcgcGGCGGGCCCGcGGcgugCCgGCCGGu -3'
miRNA:   3'- -CGCUu--CCGCCUGGGCaCCa---GG-CGGCC- -5'
21728 5' -61.3 NC_004812.1 + 7682 0.75 0.280342
Target:  5'- aGCGGggguGGGCGGGCgCGggGGUCgCGCCGa -3'
miRNA:   3'- -CGCU----UCCGCCUGgGCa-CCAG-GCGGCc -5'
21728 5' -61.3 NC_004812.1 + 109390 0.74 0.291071
Target:  5'- cGCGGAGGCGGAgcggcuguugguccCCCacggGUGGcCCGgCGGg -3'
miRNA:   3'- -CGCUUCCGCCU--------------GGG----CACCaGGCgGCC- -5'
21728 5' -61.3 NC_004812.1 + 117283 0.74 0.292997
Target:  5'- gGCGggGGCGGcgGCCUccGGUaCgGCCGGg -3'
miRNA:   3'- -CGCuuCCGCC--UGGGcaCCA-GgCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 5952 0.74 0.306095
Target:  5'- -aGggGGCaGGGCCCG-GGgaggCCGCgGGg -3'
miRNA:   3'- cgCuuCCG-CCUGGGCaCCa---GGCGgCC- -5'
21728 5' -61.3 NC_004812.1 + 138241 0.74 0.306095
Target:  5'- uGUGggGcccGCGGGCCCGgcg-CCGCCGGu -3'
miRNA:   3'- -CGCuuC---CGCCUGGGCaccaGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 101730 0.74 0.312809
Target:  5'- -gGggGGCGGGCCCuggGGUCCcCCGu -3'
miRNA:   3'- cgCuuCCGCCUGGGca-CCAGGcGGCc -5'
21728 5' -61.3 NC_004812.1 + 16202 0.76 0.23405
Target:  5'- aGCGcgcGGCGGACCCG-GGccgCgCGCCGGa -3'
miRNA:   3'- -CGCuu-CCGCCUGGGCaCCa--G-GCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 128328 0.77 0.208501
Target:  5'- cGCGAcGGCGGGCCCGUcGGcCgGCCa- -3'
miRNA:   3'- -CGCUuCCGCCUGGGCA-CCaGgCGGcc -5'
21728 5' -61.3 NC_004812.1 + 77476 0.77 0.203213
Target:  5'- aGCGGAGGCGGggcugggACCCG-GGcCCGgCGGg -3'
miRNA:   3'- -CGCUUCCGCC-------UGGGCaCCaGGCgGCC- -5'
21728 5' -61.3 NC_004812.1 + 117467 0.82 0.0913
Target:  5'- cCGggGGCGGACCCccGGcccggCCGCCGGg -3'
miRNA:   3'- cGCuuCCGCCUGGGcaCCa----GGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 1244 0.81 0.114204
Target:  5'- cGCccGGGCGGcgccgcggccGCCCGuUGGUCCGCCGGc -3'
miRNA:   3'- -CGcuUCCGCC----------UGGGC-ACCAGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 128962 0.8 0.12915
Target:  5'- cGCGggGGuCGGGCCCGgcgggcGGUCgCGCCGu -3'
miRNA:   3'- -CGCuuCC-GCCUGGGCa-----CCAG-GCGGCc -5'
21728 5' -61.3 NC_004812.1 + 1324 0.8 0.13562
Target:  5'- gGCGGuccgcGGGCGGuCCgCGggcGGUCCGCCGGa -3'
miRNA:   3'- -CGCU-----UCCGCCuGG-GCa--CCAGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 5634 0.79 0.149463
Target:  5'- uCGggGGcCGGGCCCGgGGUC-GCCGGg -3'
miRNA:   3'- cGCuuCC-GCCUGGGCaCCAGgCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 15241 0.78 0.172641
Target:  5'- cGCGcAGGGCGGACCCGgcGGcCCGgUGGg -3'
miRNA:   3'- -CGC-UUCCGCCUGGGCa-CCaGGCgGCC- -5'
21728 5' -61.3 NC_004812.1 + 84435 0.78 0.172641
Target:  5'- cGCGAAGGgGGuuCCG-GGUCCGCCu- -3'
miRNA:   3'- -CGCUUCCgCCugGGCaCCAGGCGGcc -5'
21728 5' -61.3 NC_004812.1 + 133922 0.78 0.185395
Target:  5'- gGCGggGG-GGACgCGgGGUCCGCuCGGg -3'
miRNA:   3'- -CGCuuCCgCCUGgGCaCCAGGCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.