miRNA display CGI


Results 1 - 20 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 5' -61.3 NC_004812.1 + 145607 1.12 0.000847
Target:  5'- gGCGAAGGCGGACCCGUGGUCCGCCGGg -3'
miRNA:   3'- -CGCUUCCGCCUGGGCACCAGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 123554 0.84 0.070982
Target:  5'- gGCGGAGGCGGGgCCGUcaaaaGGggCCGCCGGg -3'
miRNA:   3'- -CGCUUCCGCCUgGGCA-----CCa-GGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 94110 0.84 0.074663
Target:  5'- gGCGAAuccGGCGGGCgCGUGGUCCgcGCCGGc -3'
miRNA:   3'- -CGCUU---CCGCCUGgGCACCAGG--CGGCC- -5'
21728 5' -61.3 NC_004812.1 + 148368 0.82 0.0913
Target:  5'- cCGggGGCGGACCCccGGcccggCCGCCGGg -3'
miRNA:   3'- cGCuuCCGCCUGGGcaCCa----GGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 117467 0.82 0.0913
Target:  5'- cCGggGGCGGACCCccGGcccggCCGCCGGg -3'
miRNA:   3'- cGCuuCCGCCUGGGcaCCa----GGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 1244 0.81 0.114204
Target:  5'- cGCccGGGCGGcgccgcggccGCCCGuUGGUCCGCCGGc -3'
miRNA:   3'- -CGcuUCCGCC----------UGGGC-ACCAGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 32145 0.81 0.114204
Target:  5'- cGCccGGGCGGcgccgcggccGCCCGuUGGUCCGCCGGc -3'
miRNA:   3'- -CGcuUCCGCC----------UGGGC-ACCAGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 3454 0.8 0.12915
Target:  5'- cGCGggGGuCGGGCCCGgcgggcGGUCgCGCCGu -3'
miRNA:   3'- -CGCuuCC-GCCUGGGCa-----CCAG-GCGGCc -5'
21728 5' -61.3 NC_004812.1 + 128962 0.8 0.12915
Target:  5'- cGCGggGGuCGGGCCCGgcgggcGGUCgCGCCGu -3'
miRNA:   3'- -CGCuuCC-GCCUGGGCa-----CCAG-GCGGCc -5'
21728 5' -61.3 NC_004812.1 + 1324 0.8 0.13562
Target:  5'- gGCGGuccgcGGGCGGuCCgCGggcGGUCCGCCGGa -3'
miRNA:   3'- -CGCU-----UCCGCCuGG-GCa--CCAGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 32225 0.8 0.13562
Target:  5'- gGCGGuccgcGGGCGGuCCgCGggcGGUCCGCCGGa -3'
miRNA:   3'- -CGCU-----UCCGCCuGG-GCa--CCAGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 5634 0.79 0.149463
Target:  5'- uCGggGGcCGGGCCCGgGGUC-GCCGGg -3'
miRNA:   3'- cGCuuCC-GCCUGGGCaCCAGgCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 36535 0.79 0.149463
Target:  5'- uCGggGGcCGGGCCCGgGGUC-GCCGGg -3'
miRNA:   3'- cGCuuCC-GCCUGGGCaCCAGgCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 20854 0.79 0.160675
Target:  5'- gGCGGAGGgGGGCUCGUGGcCCcucCCGGa -3'
miRNA:   3'- -CGCUUCCgCCUGGGCACCaGGc--GGCC- -5'
21728 5' -61.3 NC_004812.1 + 131248 0.78 0.168566
Target:  5'- cGCGGAcgccGGCGaGCCCGUGGUcgccgcccaCCGCCGGc -3'
miRNA:   3'- -CGCUU----CCGCcUGGGCACCA---------GGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 84435 0.78 0.172641
Target:  5'- cGCGAAGGgGGuuCCG-GGUCCGCCu- -3'
miRNA:   3'- -CGCUUCCgCCugGGCaCCAGGCGGcc -5'
21728 5' -61.3 NC_004812.1 + 15241 0.78 0.172641
Target:  5'- cGCGcAGGGCGGACCCGgcGGcCCGgUGGg -3'
miRNA:   3'- -CGC-UUCCGCCUGGGCa-CCaGGCgGCC- -5'
21728 5' -61.3 NC_004812.1 + 17608 0.78 0.176803
Target:  5'- gGCG-AGGCGGGCCCG-GGcgaaccgcUCCGCCGu -3'
miRNA:   3'- -CGCuUCCGCCUGGGCaCC--------AGGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 81808 0.78 0.184519
Target:  5'- cGCGGuucGGGCGGGCCCGcGGgggcgcgggaagUCGCCGGa -3'
miRNA:   3'- -CGCU---UCCGCCUGGGCaCCa-----------GGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 133922 0.78 0.185395
Target:  5'- gGCGggGG-GGACgCGgGGUCCGCuCGGg -3'
miRNA:   3'- -CGCuuCCgCCUGgGCaCCAGGCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.