miRNA display CGI


Results 1 - 20 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 5' -61.3 NC_004812.1 + 89 0.7 0.52412
Target:  5'- cGCGAGGGaCGGGCCgG-GG-CgCGCgCGGg -3'
miRNA:   3'- -CGCUUCC-GCCUGGgCaCCaG-GCG-GCC- -5'
21728 5' -61.3 NC_004812.1 + 205 0.67 0.657876
Target:  5'- cCGggGGaGGGCCCG-GGUCgCGCagcccCGGc -3'
miRNA:   3'- cGCuuCCgCCUGGGCaCCAG-GCG-----GCC- -5'
21728 5' -61.3 NC_004812.1 + 215 0.68 0.638574
Target:  5'- gGgGAGGGgGGGCCCaaGGcucCCGCgGGg -3'
miRNA:   3'- -CgCUUCCgCCUGGGcaCCa--GGCGgCC- -5'
21728 5' -61.3 NC_004812.1 + 517 0.69 0.571213
Target:  5'- cGCGGccgGGGCGGGCCCGcgcgcccgGGcccucCCGCCu- -3'
miRNA:   3'- -CGCU---UCCGCCUGGGCa-------CCa----GGCGGcc -5'
21728 5' -61.3 NC_004812.1 + 593 0.68 0.599006
Target:  5'- cGCGGcuccgguAGcGCGGACCCGa--UCCGCCGc -3'
miRNA:   3'- -CGCU-------UC-CGCCUGGGCaccAGGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 1091 0.69 0.557903
Target:  5'- cGCGGucuccuccugcccGGCGG-CCCG-GGUCgcuuCGCCGGg -3'
miRNA:   3'- -CGCUu------------CCGCCuGGGCaCCAG----GCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 1244 0.81 0.114204
Target:  5'- cGCccGGGCGGcgccgcggccGCCCGuUGGUCCGCCGGc -3'
miRNA:   3'- -CGcuUCCGCC----------UGGGC-ACCAGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 1297 0.68 0.619254
Target:  5'- cCGAGGGCGG-UCCGagggcGGUCCGCg-- -3'
miRNA:   3'- cGCUUCCGCCuGGGCa----CCAGGCGgcc -5'
21728 5' -61.3 NC_004812.1 + 1299 0.69 0.552225
Target:  5'- cCGGAGGCGGGgcgccgaccCCCG-GGccCCGCCGc -3'
miRNA:   3'- cGCUUCCGCCU---------GGGCaCCa-GGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 1324 0.8 0.13562
Target:  5'- gGCGGuccgcGGGCGGuCCgCGggcGGUCCGCCGGa -3'
miRNA:   3'- -CGCU-----UCCGCCuGG-GCa--CCAGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 1449 0.68 0.609603
Target:  5'- cGCGAGGGcCGGGCaCgGcGGcgaCGCCGGc -3'
miRNA:   3'- -CGCUUCC-GCCUG-GgCaCCag-GCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 1490 0.66 0.742972
Target:  5'- gGCGgcGGCGGAgCgCCGgccGGcccgcgCCGCCGc -3'
miRNA:   3'- -CGCuuCCGCCU-G-GGCa--CCa-----GGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 2342 0.68 0.628913
Target:  5'- cGCGGAGGacgggGGGCgCGUcc-CCGCCGGa -3'
miRNA:   3'- -CGCUUCCg----CCUGgGCAccaGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 2691 0.66 0.742972
Target:  5'- cGCGAAGacgcCGGGCCCGaagacgCgGCCGGa -3'
miRNA:   3'- -CGCUUCc---GCCUGGGCacca--GgCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 2820 0.77 0.208501
Target:  5'- cGCGAcGGCGGGCCCGUcGGcCgGCCa- -3'
miRNA:   3'- -CGCUuCCGCCUGGGCA-CCaGgCGGcc -5'
21728 5' -61.3 NC_004812.1 + 3454 0.8 0.12915
Target:  5'- cGCGggGGuCGGGCCCGgcgggcGGUCgCGCCGu -3'
miRNA:   3'- -CGCuuCC-GCCUGGGCa-----CCAG-GCGGCc -5'
21728 5' -61.3 NC_004812.1 + 3501 0.73 0.348049
Target:  5'- cGCGGGcGCGGGCCCGgGG-CCGgCGGc -3'
miRNA:   3'- -CGCUUcCGCCUGGGCaCCaGGCgGCC- -5'
21728 5' -61.3 NC_004812.1 + 3529 0.72 0.401976
Target:  5'- cCGggGGCGGGgCCGcGG--CGCCGGg -3'
miRNA:   3'- cGCuuCCGCCUgGGCaCCagGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 3630 0.68 0.609603
Target:  5'- cGCGccGGCGGGCgCGcGGcgCCGCCc- -3'
miRNA:   3'- -CGCuuCCGCCUGgGCaCCa-GGCGGcc -5'
21728 5' -61.3 NC_004812.1 + 3803 0.71 0.460917
Target:  5'- gGCGAcGGCGGcCUCGgcg-CCGCCGGc -3'
miRNA:   3'- -CGCUuCCGCCuGGGCaccaGGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.