miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 3' -52.9 NC_004812.1 + 98910 0.65 0.985036
Target:  5'- cGGUGGCGCGgcagaagcgcuccuGGCgcuCGAc--CGCGGCCCg -3'
miRNA:   3'- -CUACUGUGC--------------UCG---GCUauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 98503 0.66 0.977343
Target:  5'- --cGGCGCGGggcGCCGGgucccggGCGGCCCc -3'
miRNA:   3'- cuaCUGUGCU---CGGCUauag---CGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 103165 0.66 0.979661
Target:  5'- gGAgcGCGgGGGCCGccgucagCGCGGCCCc -3'
miRNA:   3'- -CUacUGUgCUCGGCuaua---GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 18979 0.66 0.974837
Target:  5'- cGAUGAcCGCGGGCgGAUccagcagccggaGgccCGCGGCCg -3'
miRNA:   3'- -CUACU-GUGCUCGgCUA------------Ua--GCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 73198 0.66 0.979661
Target:  5'- gGcgGGCG-GGGCCGGgacguccUCGCGGCCg -3'
miRNA:   3'- -CuaCUGUgCUCGGCUau-----AGCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 129245 0.66 0.975863
Target:  5'- -cUGGCGCGGGCCGcgcgccagcaGCGGCgCg -3'
miRNA:   3'- cuACUGUGCUCGGCuauag-----CGCUGgG- -5'
21729 3' -52.9 NC_004812.1 + 101913 0.66 0.977343
Target:  5'- --aGGCGCGgcGGUCGGgccUCGgGGCCCc -3'
miRNA:   3'- cuaCUGUGC--UCGGCUau-AGCgCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 122359 0.66 0.979661
Target:  5'- --cGGCGgGGGCCGGgg-CGCGgggcgcggcgGCCCc -3'
miRNA:   3'- cuaCUGUgCUCGGCUauaGCGC----------UGGG- -5'
21729 3' -52.9 NC_004812.1 + 8024 0.66 0.979661
Target:  5'- gGggGGCGCGGGCCGGccucCGcCGGCaCCc -3'
miRNA:   3'- -CuaCUGUGCUCGGCUaua-GC-GCUG-GG- -5'
21729 3' -52.9 NC_004812.1 + 145754 0.66 0.974837
Target:  5'- ---cGCGCGGGCgGA----GCGACCCg -3'
miRNA:   3'- cuacUGUGCUCGgCUauagCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 124181 0.66 0.98376
Target:  5'- cGUGGgGCG-GCUGGg--CGCGGCCg -3'
miRNA:   3'- cUACUgUGCuCGGCUauaGCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 94269 0.66 0.979661
Target:  5'- --cGcCGCGGGCgCGcgc-CGCGGCCCg -3'
miRNA:   3'- cuaCuGUGCUCG-GCuauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 51089 0.66 0.979661
Target:  5'- --cGGUACGAgGCCGAg--CGCGACUg -3'
miRNA:   3'- cuaCUGUGCU-CGGCUauaGCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 153061 0.66 0.979437
Target:  5'- --cGGCGCgcaagaaGAGCCGGcccggcgcCGCGGCCCc -3'
miRNA:   3'- cuaCUGUG-------CUCGGCUaua-----GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 18920 0.66 0.974837
Target:  5'- --gGGcCGCGAgcaGCCGggGUUGCaGGCCCg -3'
miRNA:   3'- cuaCU-GUGCU---CGGCuaUAGCG-CUGGG- -5'
21729 3' -52.9 NC_004812.1 + 60348 0.66 0.974837
Target:  5'- aGGUGAUGuCG-GCCGGcAggGCGGCCCc -3'
miRNA:   3'- -CUACUGU-GCuCGGCUaUagCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 48154 0.66 0.977343
Target:  5'- --aGGCGCGGcGCCGGgcg-GCGGCCg -3'
miRNA:   3'- cuaCUGUGCU-CGGCUauagCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 49739 0.66 0.979661
Target:  5'- --cGACG-GGGUCGggGUCGCGgcggggGCCCg -3'
miRNA:   3'- cuaCUGUgCUCGGCuaUAGCGC------UGGG- -5'
21729 3' -52.9 NC_004812.1 + 49883 0.66 0.979661
Target:  5'- --gGACgAUGGGCCccgc-CGCGACCCc -3'
miRNA:   3'- cuaCUG-UGCUCGGcuauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 102446 0.66 0.977343
Target:  5'- ---cACGCGGGCgCGGUA-CGUGuCCCg -3'
miRNA:   3'- cuacUGUGCUCG-GCUAUaGCGCuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.