miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 3' -52.9 NC_004812.1 + 93 0.67 0.962439
Target:  5'- --aGGgACGGGCCGGgg-CGCGcgcggggccgggaGCCCg -3'
miRNA:   3'- cuaCUgUGCUCGGCUauaGCGC-------------UGGG- -5'
21729 3' -52.9 NC_004812.1 + 146 0.68 0.951445
Target:  5'- cGUGGCGcCGcGCCGccgcgccCGCGGCCCg -3'
miRNA:   3'- cUACUGU-GCuCGGCuaua---GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 587 0.7 0.877497
Target:  5'- cGcgGGCGCGGcuCCGGUAgCGCGgACCCg -3'
miRNA:   3'- -CuaCUGUGCUc-GGCUAUaGCGC-UGGG- -5'
21729 3' -52.9 NC_004812.1 + 728 0.68 0.934548
Target:  5'- --cGGCGCGGucGCCGGcgggggugggggcggCGCGACCCu -3'
miRNA:   3'- cuaCUGUGCU--CGGCUaua------------GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 1632 0.69 0.922374
Target:  5'- cGUGcGCGCGGGUCccg--CGCGGCCCg -3'
miRNA:   3'- cUAC-UGUGCUCGGcuauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 1648 0.77 0.553194
Target:  5'- cGAUGACGCGccgcucccccguuGGCCGcgGcgcCGCGGCCCg -3'
miRNA:   3'- -CUACUGUGC-------------UCGGCuaUa--GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 2501 0.68 0.942719
Target:  5'- cGcgGGCggGCGAGUCGGcggCGCGGCCg -3'
miRNA:   3'- -CuaCUG--UGCUCGGCUauaGCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 2574 0.69 0.904564
Target:  5'- --gGGCACGGGC--GUGUCG-GGCCCg -3'
miRNA:   3'- cuaCUGUGCUCGgcUAUAGCgCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 2984 0.66 0.981797
Target:  5'- --aGACGuCGggcGGCCGGUccaGUUGCcGGCCCa -3'
miRNA:   3'- cuaCUGU-GC---UCGGCUA---UAGCG-CUGGG- -5'
21729 3' -52.9 NC_004812.1 + 3223 0.7 0.87016
Target:  5'- --aGGCgcgcgGCGGGCCGAaggCGCGGCCg -3'
miRNA:   3'- cuaCUG-----UGCUCGGCUauaGCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 3501 0.71 0.84687
Target:  5'- cGcgGGCGCGGGcCCGGggccgGCGGCCCc -3'
miRNA:   3'- -CuaCUGUGCUC-GGCUauag-CGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 3737 0.66 0.975863
Target:  5'- -cUGGCGCGGGCCGcgcgccagcaGCGGCgCg -3'
miRNA:   3'- cuACUGUGCUCGGCuauag-----CGCUGgG- -5'
21729 3' -52.9 NC_004812.1 + 4374 0.68 0.933033
Target:  5'- cAUGGCGCGcgcccuGGCCGAgg-CGUcGCCCg -3'
miRNA:   3'- cUACUGUGC------UCGGCUauaGCGcUGGG- -5'
21729 3' -52.9 NC_004812.1 + 4810 0.69 0.922374
Target:  5'- uGcgGGCGCgGGGUCGGca-CGCGGCCCc -3'
miRNA:   3'- -CuaCUGUG-CUCGGCUauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 4861 0.72 0.821794
Target:  5'- --cGGCGCG-GCCGugaa-GCGGCCCg -3'
miRNA:   3'- cuaCUGUGCuCGGCuauagCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 5222 0.69 0.916679
Target:  5'- --aGGC-CGAGCCGGcgucggccUCGCGGCCg -3'
miRNA:   3'- cuaCUGuGCUCGGCUau------AGCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 5254 0.67 0.971854
Target:  5'- --gGGCGCGccgagucGGCCGc---CGCGGCCCc -3'
miRNA:   3'- cuaCUGUGC-------UCGGCuauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 5392 0.74 0.708074
Target:  5'- --cGGCGCgGGGCCGGgggcGUCGCcGGCCCc -3'
miRNA:   3'- cuaCUGUG-CUCGGCUa---UAGCG-CUGGG- -5'
21729 3' -52.9 NC_004812.1 + 5873 0.71 0.862607
Target:  5'- --gGGCGCGGGCCGGggggCGCGGgCg -3'
miRNA:   3'- cuaCUGUGCUCGGCUaua-GCGCUgGg -5'
21729 3' -52.9 NC_004812.1 + 7630 0.68 0.942719
Target:  5'- --aGACGCGcggcGGCCGggGUCGgGGCgCg -3'
miRNA:   3'- cuaCUGUGC----UCGGCuaUAGCgCUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.