miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 3' -52.9 NC_004812.1 + 52541 0.72 0.813074
Target:  5'- cAUGACGaccuuGCCGAccgCGCGGCCCa -3'
miRNA:   3'- cUACUGUgcu--CGGCUauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 71896 0.73 0.738027
Target:  5'- --cGACgGCGGGCCGGgcggCGCGGCgCCg -3'
miRNA:   3'- cuaCUG-UGCUCGGCUaua-GCGCUG-GG- -5'
21729 3' -52.9 NC_004812.1 + 117629 0.73 0.748811
Target:  5'- --cGGCGCGGGCCGccgggcgcggcgggGUCGCGGgCCg -3'
miRNA:   3'- cuaCUGUGCUCGGCua------------UAGCGCUgGG- -5'
21729 3' -52.9 NC_004812.1 + 138181 0.73 0.757541
Target:  5'- --gGACGCGGcccccGCCGcg--CGCGACCCa -3'
miRNA:   3'- cuaCUGUGCU-----CGGCuauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 83950 0.72 0.773776
Target:  5'- -uUGGCACaggugGGGCgCGAUcgucccuggggggcGUCGCGGCCCg -3'
miRNA:   3'- cuACUGUG-----CUCG-GCUA--------------UAGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 113442 0.72 0.785942
Target:  5'- cGUGACcaacgccCGGGCCGccgcgGUGUCGCGgACCCu -3'
miRNA:   3'- cUACUGu------GCUCGGC-----UAUAGCGC-UGGG- -5'
21729 3' -52.9 NC_004812.1 + 95061 0.72 0.804186
Target:  5'- --cGGCGCGAGCgGcUA-CGCGACCg -3'
miRNA:   3'- cuaCUGUGCUCGgCuAUaGCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 128492 0.72 0.813074
Target:  5'- --aGACgucggGCGGGCCGGUccaGUUGCcGGCCCa -3'
miRNA:   3'- cuaCUG-----UGCUCGGCUA---UAGCG-CUGGG- -5'
21729 3' -52.9 NC_004812.1 + 19051 0.72 0.813074
Target:  5'- --cGGcCGCGgcGGCCGAgacCGCGGCCCa -3'
miRNA:   3'- cuaCU-GUGC--UCGGCUauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 9010 0.73 0.738027
Target:  5'- --gGGCGCuugGGGCCG-UAUCuGCGGCCCg -3'
miRNA:   3'- cuaCUGUG---CUCGGCuAUAG-CGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 92760 0.73 0.728125
Target:  5'- aGUGGCGCGGGCCGcccgcggcguucAUGUCGCuggugGACCa -3'
miRNA:   3'- cUACUGUGCUCGGC------------UAUAGCG-----CUGGg -5'
21729 3' -52.9 NC_004812.1 + 156391 0.74 0.718137
Target:  5'- ---cGCGgGGGCCGGggcugCGCGACCCg -3'
miRNA:   3'- cuacUGUgCUCGGCUaua--GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 96640 0.78 0.485048
Target:  5'- --cGcCACGAGCCGGcgccgCGCGACCCc -3'
miRNA:   3'- cuaCuGUGCUCGGCUaua--GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 79034 0.77 0.524127
Target:  5'- -cUGGCugGGGUCGGgggcCGCGGCCCa -3'
miRNA:   3'- cuACUGugCUCGGCUaua-GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 1648 0.77 0.553194
Target:  5'- cGAUGACGCGccgcucccccguuGGCCGcgGcgcCGCGGCCCg -3'
miRNA:   3'- -CUACUGUGC-------------UCGGCuaUa--GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 142062 0.75 0.635282
Target:  5'- --gGGCgACGAGCCcgcccccGcgGUCGCGGCCCa -3'
miRNA:   3'- cuaCUG-UGCUCGG-------CuaUAGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 145420 0.75 0.646646
Target:  5'- --cGugGCGGGCCGuuaaaaggCGCGACCUg -3'
miRNA:   3'- cuaCugUGCUCGGCuaua----GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 62770 0.74 0.677531
Target:  5'- --cGACcucuGCGAGCgGAUGgcCGCGGCCCu -3'
miRNA:   3'- cuaCUG----UGCUCGgCUAUa-GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 108422 0.74 0.697947
Target:  5'- cGUGGCGCGGacccucgacGCCGAggccaccuUCGCGAUCCa -3'
miRNA:   3'- cUACUGUGCU---------CGGCUau------AGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 130900 0.74 0.708075
Target:  5'- --cGGCGCgGGGCCGGgggcGUCGCcGGCCCc -3'
miRNA:   3'- cuaCUGUG-CUCGGCUa---UAGCG-CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.