miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 3' -52.9 NC_004812.1 + 145670 1.11 0.004853
Target:  5'- gGAUGACACGAGCCGAUAUCGCGACCCc -3'
miRNA:   3'- -CUACUGUGCUCGGCUAUAGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 123060 0.81 0.353045
Target:  5'- uGGUGAgCACGGGCCGGUcGUCGuCGGCCUc -3'
miRNA:   3'- -CUACU-GUGCUCGGCUA-UAGC-GCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 48218 0.8 0.377348
Target:  5'- --cGGCGCGAGCgGAgcccCGCGGCCCa -3'
miRNA:   3'- cuaCUGUGCUCGgCUaua-GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 82529 0.79 0.429214
Target:  5'- -cUGAUGCGGGCCGAg---GCGGCCCg -3'
miRNA:   3'- cuACUGUGCUCGGCUauagCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 96640 0.78 0.485048
Target:  5'- --cGcCACGAGCCGGcgccgCGCGACCCc -3'
miRNA:   3'- cuaCuGUGCUCGGCUaua--GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 126701 0.77 0.524127
Target:  5'- ----cCGCGGGCCGcgcAUCGCGGCCCa -3'
miRNA:   3'- cuacuGUGCUCGGCua-UAGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 79034 0.77 0.524127
Target:  5'- -cUGGCugGGGUCGGgggcCGCGGCCCa -3'
miRNA:   3'- cuACUGugCUCGGCUaua-GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 32549 0.77 0.553194
Target:  5'- cGAUGACGCGccgcucccccguuGGCCGcgGcgcCGCGGCCCg -3'
miRNA:   3'- -CUACUGUGC-------------UCGGCuaUa--GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 1648 0.77 0.553194
Target:  5'- cGAUGACGCGccgcucccccguuGGCCGcgGcgcCGCGGCCCg -3'
miRNA:   3'- -CUACUGUGC-------------UCGGCuaUa--GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 18453 0.76 0.605337
Target:  5'- cGGUGGCGCG-GCgGGggggCGCGGCCCc -3'
miRNA:   3'- -CUACUGUGCuCGgCUaua-GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 134059 0.75 0.625982
Target:  5'- --aGGCcgACGGGCCGGUGUCGUuuCCCg -3'
miRNA:   3'- cuaCUG--UGCUCGGCUAUAGCGcuGGG- -5'
21729 3' -52.9 NC_004812.1 + 142062 0.75 0.635282
Target:  5'- --gGGCgACGAGCCcgcccccGcgGUCGCGGCCCa -3'
miRNA:   3'- cuaCUG-UGCUCGG-------CuaUAGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 145420 0.75 0.646646
Target:  5'- --cGugGCGGGCCGuuaaaaggCGCGACCUg -3'
miRNA:   3'- cuaCugUGCUCGGCuaua----GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 62770 0.74 0.677531
Target:  5'- --cGACcucuGCGAGCgGAUGgcCGCGGCCCu -3'
miRNA:   3'- cuaCUG----UGCUCGgCUAUa-GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 99540 0.74 0.69693
Target:  5'- --cGACGCggugucgGAGCCGAc--CGCGGCCCg -3'
miRNA:   3'- cuaCUGUG-------CUCGGCUauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 108422 0.74 0.697947
Target:  5'- cGUGGCGCGGacccucgacGCCGAggccaccuUCGCGAUCCa -3'
miRNA:   3'- cUACUGUGCU---------CGGCUau------AGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 5392 0.74 0.708074
Target:  5'- --cGGCGCgGGGCCGGgggcGUCGCcGGCCCc -3'
miRNA:   3'- cuaCUGUG-CUCGGCUa---UAGCG-CUGGG- -5'
21729 3' -52.9 NC_004812.1 + 130900 0.74 0.708075
Target:  5'- --cGGCGCgGGGCCGGgggcGUCGCcGGCCCc -3'
miRNA:   3'- cuaCUGUG-CUCGGCUa---UAGCG-CUGGG- -5'
21729 3' -52.9 NC_004812.1 + 30883 0.74 0.718137
Target:  5'- ---cGCGgGGGCCGGggcugCGCGACCCg -3'
miRNA:   3'- cuacUGUgCUCGGCUaua--GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 156391 0.74 0.718137
Target:  5'- ---cGCGgGGGCCGGggcugCGCGACCCg -3'
miRNA:   3'- cuacUGUgCUCGGCUaua--GCGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.