miRNA display CGI


Results 1 - 20 of 556 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 5' -54.2 NC_004812.1 + 86388 0.66 0.965204
Target:  5'- aCUGCgaccgggccaGCGGGGugacGGUGACGACc-GACGGa -3'
miRNA:   3'- -GAUG----------UGCCUC----UCGCUGCUGcuCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 76504 0.66 0.961886
Target:  5'- -gGC-CGGgcucAGGGCGGCGACGGuGuCGGc -3'
miRNA:   3'- gaUGuGCC----UCUCGCUGCUGCU-CuGCC- -5'
21730 5' -54.2 NC_004812.1 + 144510 0.66 0.961886
Target:  5'- cCUGCGC-GAGGcgcGCGugGGCGAcaGCGGa -3'
miRNA:   3'- -GAUGUGcCUCU---CGCugCUGCUc-UGCC- -5'
21730 5' -54.2 NC_004812.1 + 108513 0.66 0.965204
Target:  5'- -cGCACGGGGcgcacGGCGGCGGCcgccGAGuACGc -3'
miRNA:   3'- gaUGUGCCUC-----UCGCUGCUG----CUC-UGCc -5'
21730 5' -54.2 NC_004812.1 + 144405 0.66 0.961886
Target:  5'- -gGCGUGGuacGAGCGGCG-CGAcGGCGGc -3'
miRNA:   3'- gaUGUGCCu--CUCGCUGCuGCU-CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 151933 0.66 0.965204
Target:  5'- -gGCGCGccGGAG-GugGACGAGGCGc -3'
miRNA:   3'- gaUGUGCc-UCUCgCugCUGCUCUGCc -5'
21730 5' -54.2 NC_004812.1 + 65204 0.66 0.976452
Target:  5'- -cGCAUGGAGGcCGACGACGccuGCGc -3'
miRNA:   3'- gaUGUGCCUCUcGCUGCUGCuc-UGCc -5'
21730 5' -54.2 NC_004812.1 + 140796 0.66 0.961886
Target:  5'- gUGguCGGGGgaGGgGAUGGgGAGGCGGa -3'
miRNA:   3'- gAUguGCCUC--UCgCUGCUgCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 139032 0.66 0.961886
Target:  5'- uCUGCuguCGGuGA-CGACGGagGGGACGGa -3'
miRNA:   3'- -GAUGu--GCCuCUcGCUGCUg-CUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 141468 0.66 0.965204
Target:  5'- ---uGCGGGGAGCccccgaGGCGACGcGGcCGGa -3'
miRNA:   3'- gaugUGCCUCUCG------CUGCUGCuCU-GCC- -5'
21730 5' -54.2 NC_004812.1 + 57556 0.66 0.961886
Target:  5'- ----cCGGGGAGUGgccGCGAggaagagagcCGAGACGGg -3'
miRNA:   3'- gauguGCCUCUCGC---UGCU----------GCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 128282 0.66 0.961886
Target:  5'- aCUGCGCGGcGGGCaGcACGGCGcaGGGCaGGu -3'
miRNA:   3'- -GAUGUGCCuCUCG-C-UGCUGC--UCUG-CC- -5'
21730 5' -54.2 NC_004812.1 + 123813 0.66 0.965204
Target:  5'- aUAUACGGGGuGCcGCGgGCGGGGCccGGg -3'
miRNA:   3'- gAUGUGCCUCuCGcUGC-UGCUCUG--CC- -5'
21730 5' -54.2 NC_004812.1 + 155876 0.66 0.961886
Target:  5'- -cGCGCGGcGGGgGAgGGgaGGGGCGGg -3'
miRNA:   3'- gaUGUGCCuCUCgCUgCUg-CUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 154891 0.66 0.965204
Target:  5'- -cGCGCGGGGccgGGCGGagucUGGCGgagucGGGCGGg -3'
miRNA:   3'- gaUGUGCCUC---UCGCU----GCUGC-----UCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 117670 0.66 0.961886
Target:  5'- -gGCGcCGGGGGGUGcCGGCgGAGGcCGGc -3'
miRNA:   3'- gaUGU-GCCUCUCGCuGCUG-CUCU-GCC- -5'
21730 5' -54.2 NC_004812.1 + 125151 0.66 0.961886
Target:  5'- -cACGCGGccgcgcgcgccGGGGCGGgaGGCGGGAgGGc -3'
miRNA:   3'- gaUGUGCC-----------UCUCGCUg-CUGCUCUgCC- -5'
21730 5' -54.2 NC_004812.1 + 93110 0.66 0.965204
Target:  5'- gCUuCGCGGugucGGGCGGCGGCGucugcguGACGu -3'
miRNA:   3'- -GAuGUGCCu---CUCGCUGCUGCu------CUGCc -5'
21730 5' -54.2 NC_004812.1 + 126968 0.66 0.968013
Target:  5'- -gGCACGGc-GGCGACGcCGGcguccucGGCGGg -3'
miRNA:   3'- gaUGUGCCucUCGCUGCuGCU-------CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 72826 0.66 0.965204
Target:  5'- -gGCACGGGGGGCucccCG-CGAG-CGGc -3'
miRNA:   3'- gaUGUGCCUCUCGcu--GCuGCUCuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.