miRNA display CGI


Results 1 - 20 of 556 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 5' -54.2 NC_004812.1 + 146254 1.1 0.004686
Target:  5'- aCUACACGGAGAGCGACGACGAGACGGc -3'
miRNA:   3'- -GAUGUGCCUCUCGCUGCUGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 26023 0.84 0.218363
Target:  5'- -gACGCGGAcGGCGACGGCGGGGcCGGg -3'
miRNA:   3'- gaUGUGCCUcUCGCUGCUGCUCU-GCC- -5'
21730 5' -54.2 NC_004812.1 + 151532 0.84 0.218363
Target:  5'- -gACGCGGAcGGCGACGGCGGGGcCGGg -3'
miRNA:   3'- gaUGUGCCUcUCGCUGCUGCUCU-GCC- -5'
21730 5' -54.2 NC_004812.1 + 59695 0.83 0.240435
Target:  5'- -cGCGCgagGGAGAGCGGCGGCGAG-CGGc -3'
miRNA:   3'- gaUGUG---CCUCUCGCUGCUGCUCuGCC- -5'
21730 5' -54.2 NC_004812.1 + 153133 0.82 0.283505
Target:  5'- -gGCGCGGGGGGCucGGCGGCGGGGCGcGg -3'
miRNA:   3'- gaUGUGCCUCUCG--CUGCUGCUCUGC-C- -5'
21730 5' -54.2 NC_004812.1 + 70878 0.82 0.283505
Target:  5'- gCUGCGCGGggGGGGCGGgGAgGGGGCGGg -3'
miRNA:   3'- -GAUGUGCC--UCUCGCUgCUgCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 122232 0.82 0.283505
Target:  5'- -gGCGCGGGGGGCucGGCGGCGGGGCGcGg -3'
miRNA:   3'- gaUGUGCCUCUCG--CUGCUGCUCUGC-C- -5'
21730 5' -54.2 NC_004812.1 + 10720 0.81 0.303755
Target:  5'- gCUcCAgGGGGAGgGGCGGCGGGGCGGc -3'
miRNA:   3'- -GAuGUgCCUCUCgCUGCUGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 139324 0.81 0.303755
Target:  5'- -gGCGCGGAGAGCGACG-CG-GGCGa -3'
miRNA:   3'- gaUGUGCCUCUCGCUGCuGCuCUGCc -5'
21730 5' -54.2 NC_004812.1 + 4964 0.81 0.310747
Target:  5'- -cGgGCGGccGGCGGCGGCGAGGCGGg -3'
miRNA:   3'- gaUgUGCCucUCGCUGCUGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 130472 0.81 0.310747
Target:  5'- -cGgGCGGccGGCGGCGGCGAGGCGGg -3'
miRNA:   3'- gaUgUGCCucUCGCUGCUGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 66465 0.79 0.379139
Target:  5'- -gGCACGGAGAGCGAgCGcACGAcGGCGa -3'
miRNA:   3'- gaUGUGCCUCUCGCU-GC-UGCU-CUGCc -5'
21730 5' -54.2 NC_004812.1 + 54469 0.79 0.382403
Target:  5'- -gACGCGGAGgccauggacuacgacAGCGACGGCGGGGcCGGc -3'
miRNA:   3'- gaUGUGCCUC---------------UCGCUGCUGCUCU-GCC- -5'
21730 5' -54.2 NC_004812.1 + 121700 0.79 0.411753
Target:  5'- -gACGCGGAggaggcgGAGCGGCGGCGAGAgcaggugccCGGg -3'
miRNA:   3'- gaUGUGCCU-------CUCGCUGCUGCUCU---------GCC- -5'
21730 5' -54.2 NC_004812.1 + 152601 0.79 0.411753
Target:  5'- -gACGCGGAggaggcgGAGCGGCGGCGAGAgcaggugccCGGg -3'
miRNA:   3'- gaUGUGCCU-------CUCGCUGCUGCUCU---------GCC- -5'
21730 5' -54.2 NC_004812.1 + 156283 0.78 0.42126
Target:  5'- -gACG-GGAGGGgGACGAgGAGACGGa -3'
miRNA:   3'- gaUGUgCCUCUCgCUGCUgCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 30775 0.78 0.42126
Target:  5'- -gACG-GGAGGGgGACGAgGAGACGGa -3'
miRNA:   3'- gaUGUgCCUCUCgCUGCUgCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 100911 0.78 0.430018
Target:  5'- -gGCGCGGAGAcggccGCGAgGACGGGcCGGa -3'
miRNA:   3'- gaUGUGCCUCU-----CGCUgCUGCUCuGCC- -5'
21730 5' -54.2 NC_004812.1 + 147499 0.78 0.438882
Target:  5'- -cGgGCGGcgAGGGgGACGGCGAGGCGGc -3'
miRNA:   3'- gaUgUGCC--UCUCgCUGCUGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 98756 0.78 0.438882
Target:  5'- -cGCGCccuGGAGcgcGGCGGCGGCGAGugGGc -3'
miRNA:   3'- gaUGUG---CCUC---UCGCUGCUGCUCugCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.