miRNA display CGI


Results 1 - 20 of 556 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 5' -54.2 NC_004812.1 + 41 0.66 0.976452
Target:  5'- -cGCGCGGcGGGCcGCGgGCGcGGCGGc -3'
miRNA:   3'- gaUGUGCCuCUCGcUGC-UGCuCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 1460 0.66 0.968013
Target:  5'- -gGCACGGc-GGCGACGcCGGcguccucGGCGGg -3'
miRNA:   3'- gaUGUGCCucUCGCUGCuGCU-------CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 2048 0.66 0.976452
Target:  5'- -gGCgGCGGGGGGCG-CGG-GGGAgGGg -3'
miRNA:   3'- gaUG-UGCCUCUCGCuGCUgCUCUgCC- -5'
21730 5' -54.2 NC_004812.1 + 2152 0.66 0.965204
Target:  5'- -cGgGCGGGGcucGCGGCGGCGGccaccuccacGGCGGc -3'
miRNA:   3'- gaUgUGCCUCu--CGCUGCUGCU----------CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 2243 0.66 0.97094
Target:  5'- -cGCGCGGc--GCGGCGGCGGGGuccgcguCGGc -3'
miRNA:   3'- gaUGUGCCucuCGCUGCUGCUCU-------GCC- -5'
21730 5' -54.2 NC_004812.1 + 2366 0.71 0.806581
Target:  5'- -cGC-CGGAGAGa---GGCGGGACGGg -3'
miRNA:   3'- gaUGuGCCUCUCgcugCUGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 2498 0.67 0.950633
Target:  5'- cCU-CGCGGGcGGGCGAguCGGCGGcGCGGc -3'
miRNA:   3'- -GAuGUGCCU-CUCGCU--GCUGCUcUGCC- -5'
21730 5' -54.2 NC_004812.1 + 2533 0.69 0.898244
Target:  5'- -aGCGCGGGcAGC-ACGGCGcGGCGGu -3'
miRNA:   3'- gaUGUGCCUcUCGcUGCUGCuCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 2655 0.77 0.475342
Target:  5'- uCUGCACGGAGcGCauCGACGAGGCGc -3'
miRNA:   3'- -GAUGUGCCUCuCGcuGCUGCUCUGCc -5'
21730 5' -54.2 NC_004812.1 + 2788 0.66 0.961886
Target:  5'- -aGCACGGcgcagggcagguAGAcGUGGCGGCGcgcGACGGc -3'
miRNA:   3'- gaUGUGCC------------UCU-CGCUGCUGCu--CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 2857 0.78 0.466082
Target:  5'- -gGCACGGcGuccaCGACGACGAGGCGGc -3'
miRNA:   3'- gaUGUGCCuCuc--GCUGCUGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 3028 0.72 0.779709
Target:  5'- -gACGCGGAcAGCGACGAgGAcagcGACGa -3'
miRNA:   3'- gaUGUGCCUcUCGCUGCUgCU----CUGCc -5'
21730 5' -54.2 NC_004812.1 + 3080 0.68 0.932464
Target:  5'- gUGgGCGGcGGGaCGACGGCGuGGgGGg -3'
miRNA:   3'- gAUgUGCCuCUC-GCUGCUGCuCUgCC- -5'
21730 5' -54.2 NC_004812.1 + 3398 0.7 0.840214
Target:  5'- -gGCgGCGGAGGGCGcCGGCGuguGGCuGGg -3'
miRNA:   3'- gaUG-UGCCUCUCGCuGCUGCu--CUG-CC- -5'
21730 5' -54.2 NC_004812.1 + 3505 0.71 0.81524
Target:  5'- -gGCGCGGgcccGGGGcCGGCGGCcccgGGGGCGGg -3'
miRNA:   3'- gaUGUGCC----UCUC-GCUGCUG----CUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 3564 0.72 0.779709
Target:  5'- uUGCGCGccggcGGGcaGGCGGCGGCGGcGGCGGg -3'
miRNA:   3'- gAUGUGC-----CUC--UCGCUGCUGCU-CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 3702 0.66 0.971222
Target:  5'- -aGCA-GGucGGCGGCGGCGGcgccGGCGGa -3'
miRNA:   3'- gaUGUgCCucUCGCUGCUGCU----CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 3762 0.7 0.870898
Target:  5'- -gGCGCGGcGGcGcCGGCGACGAGGCu- -3'
miRNA:   3'- gaUGUGCCuCU-C-GCUGCUGCUCUGcc -5'
21730 5' -54.2 NC_004812.1 + 3795 0.69 0.898244
Target:  5'- -cGCACGGc-GGCGACGGCGGccuCGGc -3'
miRNA:   3'- gaUGUGCCucUCGCUGCUGCUcu-GCC- -5'
21730 5' -54.2 NC_004812.1 + 3901 0.74 0.632667
Target:  5'- -gGCGCGG-GcGCGGCGGCGcGGCGGc -3'
miRNA:   3'- gaUGUGCCuCuCGCUGCUGCuCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.