miRNA display CGI


Results 1 - 20 of 556 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 5' -54.2 NC_004812.1 + 133883 0.76 0.571228
Target:  5'- -gACACGGAGAGCGAuugcucaucggcCGugGuaaccccGGGCGGg -3'
miRNA:   3'- gaUGUGCCUCUCGCU------------GCugC-------UCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 155701 0.77 0.475342
Target:  5'- -cGCGCGcGAGGGCGugGGgGAGGgGGg -3'
miRNA:   3'- gaUGUGC-CUCUCGCugCUgCUCUgCC- -5'
21730 5' -54.2 NC_004812.1 + 156236 0.77 0.49413
Target:  5'- -gAgACGGAGAGCGG-GGCGGGAgGGg -3'
miRNA:   3'- gaUgUGCCUCUCGCUgCUGCUCUgCC- -5'
21730 5' -54.2 NC_004812.1 + 123105 0.77 0.499833
Target:  5'- -gGCGCGGAGAguccggugccgucgGCGGCGGCggcgucgGAGGCGGg -3'
miRNA:   3'- gaUGUGCCUCU--------------CGCUGCUG-------CUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 105446 0.77 0.503651
Target:  5'- gUGCGCGGggagggggucgcGGAGCGAgGACGGGgaGCGGa -3'
miRNA:   3'- gAUGUGCC------------UCUCGCUgCUGCUC--UGCC- -5'
21730 5' -54.2 NC_004812.1 + 149083 0.76 0.532666
Target:  5'- gUGgGCGGgaGGGGCGGCGcgccGCGGGGCGGg -3'
miRNA:   3'- gAUgUGCC--UCUCGCUGC----UGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 17761 0.76 0.542474
Target:  5'- uUGCGCGGuguGGGCgGGCGugGGGGCGa -3'
miRNA:   3'- gAUGUGCCu--CUCG-CUGCugCUCUGCc -5'
21730 5' -54.2 NC_004812.1 + 96163 0.76 0.55234
Target:  5'- -cGCugGuucGAGGGCGGCGGCGAGGUGGu -3'
miRNA:   3'- gaUGugC---CUCUCGCUGCUGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 130994 0.76 0.562259
Target:  5'- -gGCGCGGGGAcaCGGCGGCGGcGGCGGc -3'
miRNA:   3'- gaUGUGCCUCUc-GCUGCUGCU-CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 2655 0.77 0.475342
Target:  5'- uCUGCACGGAGcGCauCGACGAGGCGc -3'
miRNA:   3'- -GAUGUGCCUCuCGcuGCUGCUCUGCc -5'
21730 5' -54.2 NC_004812.1 + 128365 0.78 0.466082
Target:  5'- -gGCACGGcGuccaCGACGACGAGGCGGc -3'
miRNA:   3'- gaUGUGCCuCuc--GCUGCUGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 47581 0.78 0.465161
Target:  5'- -aGCGCGGAGGGCGcucggggucGCGGCGAccccgagcgcgccGACGGg -3'
miRNA:   3'- gaUGUGCCUCUCGC---------UGCUGCU-------------CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 151532 0.84 0.218363
Target:  5'- -gACGCGGAcGGCGACGGCGGGGcCGGg -3'
miRNA:   3'- gaUGUGCCUcUCGCUGCUGCUCU-GCC- -5'
21730 5' -54.2 NC_004812.1 + 70878 0.82 0.283505
Target:  5'- gCUGCGCGGggGGGGCGGgGAgGGGGCGGg -3'
miRNA:   3'- -GAUGUGCC--UCUCGCUgCUgCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 122232 0.82 0.283505
Target:  5'- -gGCGCGGGGGGCucGGCGGCGGGGCGcGg -3'
miRNA:   3'- gaUGUGCCUCUCG--CUGCUGCUCUGC-C- -5'
21730 5' -54.2 NC_004812.1 + 139324 0.81 0.303755
Target:  5'- -gGCGCGGAGAGCGACG-CG-GGCGa -3'
miRNA:   3'- gaUGUGCCUCUCGCUGCuGCuCUGCc -5'
21730 5' -54.2 NC_004812.1 + 130472 0.81 0.310747
Target:  5'- -cGgGCGGccGGCGGCGGCGAGGCGGg -3'
miRNA:   3'- gaUgUGCCucUCGCUGCUGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 66465 0.79 0.379139
Target:  5'- -gGCACGGAGAGCGAgCGcACGAcGGCGa -3'
miRNA:   3'- gaUGUGCCUCUCGCU-GC-UGCU-CUGCc -5'
21730 5' -54.2 NC_004812.1 + 121700 0.79 0.411753
Target:  5'- -gACGCGGAggaggcgGAGCGGCGGCGAGAgcaggugccCGGg -3'
miRNA:   3'- gaUGUGCCU-------CUCGCUGCUGCUCU---------GCC- -5'
21730 5' -54.2 NC_004812.1 + 156283 0.78 0.42126
Target:  5'- -gACG-GGAGGGgGACGAgGAGACGGa -3'
miRNA:   3'- gaUGUgCCUCUCgCUGCUgCUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.