miRNA display CGI


Results 1 - 20 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21731 3' -67 NC_004812.1 + 7556 0.86 0.019589
Target:  5'- gGGcGGGCGCGGGGGGCgGUCCCGCCc-- -3'
miRNA:   3'- -CC-CCCGCGCCUCCCG-CAGGGCGGcag -5'
21731 3' -67 NC_004812.1 + 13399 0.75 0.126324
Target:  5'- cGGGGGCGCGGcgGGGGUGacggCCggaggggugGCCGUCg -3'
miRNA:   3'- -CCCCCGCGCC--UCCCGCa---GGg--------CGGCAG- -5'
21731 3' -67 NC_004812.1 + 13461 0.74 0.132187
Target:  5'- cGGGGGUGgGGGGuGGCGUCgCGgggacgaacacguCCGUCa -3'
miRNA:   3'- -CCCCCGCgCCUC-CCGCAGgGC-------------GGCAG- -5'
21731 3' -67 NC_004812.1 + 76543 0.66 0.474857
Target:  5'- cGGGGCGUGGAcgcGGGCc-UCgGCCGg- -3'
miRNA:   3'- cCCCCGCGCCU---CCCGcaGGgCGGCag -5'
21731 3' -67 NC_004812.1 + 39298 0.78 0.07584
Target:  5'- cGGGGGCGCGGcgGGGGCucgGcCCCGgCCGUa -3'
miRNA:   3'- -CCCCCGCGCC--UCCCG---CaGGGC-GGCAg -5'
21731 3' -67 NC_004812.1 + 5507 0.78 0.07584
Target:  5'- cGGcGGcCGCGGGGaaGGCGUcCCCGCCGUCc -3'
miRNA:   3'- cCC-CC-GCGCCUC--CCGCA-GGGCGGCAG- -5'
21731 3' -67 NC_004812.1 + 104092 0.78 0.077729
Target:  5'- -uGGGCaucGUGGGGGGCGUCgucuCCGCCGUCu -3'
miRNA:   3'- ccCCCG---CGCCUCCCGCAG----GGCGGCAG- -5'
21731 3' -67 NC_004812.1 + 2054 0.77 0.081642
Target:  5'- gGGGGGCGCGGgggagGGGGCGcgcccCCCG-CGUCu -3'
miRNA:   3'- -CCCCCGCGCC-----UCCCGCa----GGGCgGCAG- -5'
21731 3' -67 NC_004812.1 + 33233 0.76 0.109356
Target:  5'- cGGGGGUcuccGCGGAGGacggggggcGCGUcCCCGCCGg- -3'
miRNA:   3'- -CCCCCG----CGCCUCC---------CGCA-GGGCGGCag -5'
21731 3' -67 NC_004812.1 + 91202 0.75 0.120413
Target:  5'- cGGGGGCGgGGGGcgcGGCGUCCagcucgcggaGCgCGUCg -3'
miRNA:   3'- -CCCCCGCgCCUC---CCGCAGGg---------CG-GCAG- -5'
21731 3' -67 NC_004812.1 + 69918 0.75 0.11671
Target:  5'- cGGGGGUGCGGccGGGGCGUUCUcuccggaaucggagGCCGa- -3'
miRNA:   3'- -CCCCCGCGCC--UCCCGCAGGG--------------CGGCag -5'
21731 3' -67 NC_004812.1 + 87075 0.76 0.101448
Target:  5'- aGGGGCGCGGgGGGGCGgccggaCCCGgcggccuCCGUCu -3'
miRNA:   3'- cCCCCGCGCC-UCCCGCa-----GGGC-------GGCAG- -5'
21731 3' -67 NC_004812.1 + 5045 0.83 0.03065
Target:  5'- cGGGGGCGCGcGAGGGCGccgcgCCCccggccccggccccGCCGUCg -3'
miRNA:   3'- -CCCCCGCGC-CUCCCGCa----GGG--------------CGGCAG- -5'
21731 3' -67 NC_004812.1 + 23599 0.75 0.117555
Target:  5'- cGGGGCGgGGGuuGGGCGcCCCgGUCGUCc -3'
miRNA:   3'- cCCCCGCgCCU--CCCGCaGGG-CGGCAG- -5'
21731 3' -67 NC_004812.1 + 155222 0.79 0.060713
Target:  5'- aGGGGGCGCGGcgcGGGGCGg---GCCGUCg -3'
miRNA:   3'- -CCCCCGCGCC---UCCCGCagggCGGCAG- -5'
21731 3' -67 NC_004812.1 + 7041 0.77 0.090041
Target:  5'- cGGGGaCGCgaGGGGcGGCGUCCC-CCGUCg -3'
miRNA:   3'- cCCCC-GCG--CCUC-CCGCAGGGcGGCAG- -5'
21731 3' -67 NC_004812.1 + 35532 0.75 0.120413
Target:  5'- aGGGGCG-GGGGGGCGggacgCCCGCgCGg- -3'
miRNA:   3'- cCCCCGCgCCUCCCGCa----GGGCG-GCag -5'
21731 3' -67 NC_004812.1 + 17028 0.75 0.129379
Target:  5'- gGGGGGUgaaggggucgGCGGGGGGCGccucggUCCCgGCCGcCg -3'
miRNA:   3'- -CCCCCG----------CGCCUCCCGC------AGGG-CGGCaG- -5'
21731 3' -67 NC_004812.1 + 79700 0.78 0.072193
Target:  5'- gGGGGGCuGCGGGuGGCc-CCCGCCGUCc -3'
miRNA:   3'- -CCCCCG-CGCCUcCCGcaGGGCGGCAG- -5'
21731 3' -67 NC_004812.1 + 81111 0.78 0.077729
Target:  5'- -cGGGCGCuGGGGGGCGUgCCGCUGg- -3'
miRNA:   3'- ccCCCGCG-CCUCCCGCAgGGCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.