miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21732 3' -58 NC_004812.1 + 147710 0.66 0.860827
Target:  5'- -gGUCG-UGU--GGCG-CGGGGGGCu -3'
miRNA:   3'- ggCAGCaACGauCCGCuGCCCCCUGc -5'
21732 3' -58 NC_004812.1 + 43008 0.66 0.875187
Target:  5'- gCgGUgGgggUGCggGGGCGGUGGGGGuGCGg -3'
miRNA:   3'- -GgCAgCa--ACGa-UCCGCUGCCCCC-UGC- -5'
21732 3' -58 NC_004812.1 + 98630 0.66 0.875187
Target:  5'- gCCGUCGcggccgcgcUGCgcccGGGCGcgacgcgcgcacGCGGGGGuCGa -3'
miRNA:   3'- -GGCAGCa--------ACGa---UCCGC------------UGCCCCCuGC- -5'
21732 3' -58 NC_004812.1 + 156239 0.66 0.868105
Target:  5'- aCGgagagCGggGCgggaGGGgGACgggaGGGGGACGg -3'
miRNA:   3'- gGCa----GCaaCGa---UCCgCUG----CCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 153258 0.66 0.888736
Target:  5'- cCCGgCGgggGCcgGGGCG-CGGGGcGCGg -3'
miRNA:   3'- -GGCaGCaa-CGa-UCCGCuGCCCCcUGC- -5'
21732 3' -58 NC_004812.1 + 43042 0.66 0.875187
Target:  5'- gCgGUgGgggUGCggGGGCGGUGGGGGuGCGg -3'
miRNA:   3'- -GgCAgCa--ACGa-UCCGCUGCCCCC-UGC- -5'
21732 3' -58 NC_004812.1 + 146376 0.66 0.875187
Target:  5'- cUCGUCGc-GCUgaucucAGGCGGCcuGGGGGCu -3'
miRNA:   3'- -GGCAGCaaCGA------UCCGCUGc-CCCCUGc -5'
21732 3' -58 NC_004812.1 + 7476 0.66 0.875187
Target:  5'- gCCGUUucgGCgaGGGgGAUGGGGGGgGg -3'
miRNA:   3'- -GGCAGcaaCGa-UCCgCUGCCCCCUgC- -5'
21732 3' -58 NC_004812.1 + 66545 0.66 0.867386
Target:  5'- gCGcUCGcaggcGCUGGGCuccagucGGCGGaGGGACGa -3'
miRNA:   3'- gGC-AGCaa---CGAUCCG-------CUGCC-CCCUGC- -5'
21732 3' -58 NC_004812.1 + 114923 0.66 0.868105
Target:  5'- gUGUCGUgGCU-GGCGG-GGGGGuuGg -3'
miRNA:   3'- gGCAGCAaCGAuCCGCUgCCCCCugC- -5'
21732 3' -58 NC_004812.1 + 24773 0.66 0.882065
Target:  5'- gCGUCGaUGCgcaccgGGGUGAUGaucaGGGcGACGg -3'
miRNA:   3'- gGCAGCaACGa-----UCCGCUGC----CCC-CUGC- -5'
21732 3' -58 NC_004812.1 + 61376 0.66 0.882065
Target:  5'- uCCGagaggGCgGGGCGGCGGGGuGAgGg -3'
miRNA:   3'- -GGCagcaaCGaUCCGCUGCCCC-CUgC- -5'
21732 3' -58 NC_004812.1 + 81099 0.66 0.860827
Target:  5'- cCCGUgGcggUGC-GGGCGGCGuGGuGGGCc -3'
miRNA:   3'- -GGCAgCa--ACGaUCCGCUGC-CC-CCUGc -5'
21732 3' -58 NC_004812.1 + 125516 0.66 0.875187
Target:  5'- cCCG-CGUUuCcgGGGCGcgcgcguuuuCGGGGGGCGg -3'
miRNA:   3'- -GGCaGCAAcGa-UCCGCu---------GCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 17590 0.66 0.868105
Target:  5'- gCCGcCG--GCUGGGCGuCGGaGGACu -3'
miRNA:   3'- -GGCaGCaaCGAUCCGCuGCCcCCUGc -5'
21732 3' -58 NC_004812.1 + 133907 0.66 0.875187
Target:  5'- gCCGUgGUaaccCcGGGCGG-GGGGGACGc -3'
miRNA:   3'- -GGCAgCAac--GaUCCGCUgCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 84010 0.66 0.853355
Target:  5'- gCGUCGcgGCccGGCccuccuUGGGGGGCGg -3'
miRNA:   3'- gGCAGCaaCGauCCGcu----GCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 101938 0.66 0.860088
Target:  5'- cCCGgacgCGcgGCgcGGGCGGCGGGcgucaggggccgcGGACGc -3'
miRNA:   3'- -GGCa---GCaaCGa-UCCGCUGCCC-------------CCUGC- -5'
21732 3' -58 NC_004812.1 + 76445 0.66 0.853355
Target:  5'- cCCG-CGgcGCUguccgcgaGGGCGACGaggaaggccaGGGGGCa -3'
miRNA:   3'- -GGCaGCaaCGA--------UCCGCUGC----------CCCCUGc -5'
21732 3' -58 NC_004812.1 + 118398 0.66 0.853355
Target:  5'- aCCGagGagaggGCcGGGCGACGGGcGACa -3'
miRNA:   3'- -GGCagCaa---CGaUCCGCUGCCCcCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.