Results 1 - 20 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21732 | 3' | -58 | NC_004812.1 | + | 61699 | 1.09 | 0.002444 |
Target: 5'- uCCGUCGUUGCUAGGCGACGGGGGACGc -3' miRNA: 3'- -GGCAGCAACGAUCCGCUGCCCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 24040 | 1.09 | 0.002444 |
Target: 5'- uCCGUCGUUGCUAGGCGACGGGGGACGc -3' miRNA: 3'- -GGCAGCAACGAUCCGCUGCCCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 23838 | 1.09 | 0.002444 |
Target: 5'- uCCGUCGUUGCUAGGCGACGGGGGACGc -3' miRNA: 3'- -GGCAGCAACGAUCCGCUGCCCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 149346 | 1.09 | 0.002444 |
Target: 5'- uCCGUCGUUGCUAGGCGACGGGGGACGc -3' miRNA: 3'- -GGCAGCAACGAUCCGCUGCCCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 149549 | 1.09 | 0.002444 |
Target: 5'- uCCGUCGUUGCUAGGCGACGGGGGACGc -3' miRNA: 3'- -GGCAGCAACGAUCCGCUGCCCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 132935 | 0.98 | 0.012866 |
Target: 5'- uCCGUCGUUGCUAGGCGACcGGGGACGc -3' miRNA: 3'- -GGCAGCAACGAUCCGCUGcCCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 7427 | 0.98 | 0.012866 |
Target: 5'- uCCGUCGUUGCUAGGCGACcGGGGACGc -3' miRNA: 3'- -GGCAGCAACGAUCCGCUGcCCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 104294 | 0.8 | 0.215243 |
Target: 5'- gCCGUCGccgGC-GGGCGACGgcGGGGACGg -3' miRNA: 3'- -GGCAGCaa-CGaUCCGCUGC--CCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 88221 | 0.79 | 0.225677 |
Target: 5'- cCCGgaCGgcgGCUGGGCGGCGGGGG-CGu -3' miRNA: 3'- -GGCa-GCaa-CGAUCCGCUGCCCCCuGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 26166 | 0.79 | 0.23433 |
Target: 5'- gUGUCGUUGCcgucagcgucgccGGGCGACGGGGG-CGg -3' miRNA: 3'- gGCAGCAACGa------------UCCGCUGCCCCCuGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 19870 | 0.79 | 0.23488 |
Target: 5'- -gGUCGUUgagcgucuccagcgGCgcGGCGGCGGGGGACGc -3' miRNA: 3'- ggCAGCAA--------------CGauCCGCUGCCCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 5986 | 0.77 | 0.318021 |
Target: 5'- -aGUCGcggggUGgUAGGCGcCGGGGGGCGa -3' miRNA: 3'- ggCAGCa----ACgAUCCGCuGCCCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 6160 | 0.76 | 0.339591 |
Target: 5'- -gGUCGgggGcCUGGGCGGCGGGGGuuGg -3' miRNA: 3'- ggCAGCaa-C-GAUCCGCUGCCCCCugC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 78608 | 0.76 | 0.339591 |
Target: 5'- cUCGUCGgUGgaAgcGGCGGCGGGGGGCu -3' miRNA: 3'- -GGCAGCaACgaU--CCGCUGCCCCCUGc -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 37061 | 0.76 | 0.339591 |
Target: 5'- -gGUCGgggGcCUGGGCGGCGGGGGuuGg -3' miRNA: 3'- ggCAGCaa-C-GAUCCGCUGCCCCCugC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 29331 | 0.76 | 0.347013 |
Target: 5'- cCCGUCGgcGCgGGGCGcggcuGCGaGGGGGCGc -3' miRNA: 3'- -GGCAGCaaCGaUCCGC-----UGC-CCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 154839 | 0.76 | 0.347013 |
Target: 5'- cCCGUCGgcGCgGGGCGcggcuGCGaGGGGGCGc -3' miRNA: 3'- -GGCAGCaaCGaUCCGC-----UGC-CCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 83846 | 0.76 | 0.347013 |
Target: 5'- gCCGUCuccgGggGGaGCGGCGGGGGGCGg -3' miRNA: 3'- -GGCAGcaa-CgaUC-CGCUGCCCCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 95074 | 0.76 | 0.366847 |
Target: 5'- uCCGUCGUUGCUAGGCaacgacaacccccGAgGGcgguccgccccuuuGGGGCGg -3' miRNA: 3'- -GGCAGCAACGAUCCG-------------CUgCC--------------CCCUGC- -5' |
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21732 | 3' | -58 | NC_004812.1 | + | 36890 | 0.76 | 0.369968 |
Target: 5'- aCG-CGgggUGgUAGGCGcCGGGGGGCGa -3' miRNA: 3'- gGCaGCa--ACgAUCCGCuGCCCCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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