miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21732 3' -58 NC_004812.1 + 122542 0.72 0.556183
Target:  5'- -aGUCGgggGCggggGGcGCGGgGGGGGGCGg -3'
miRNA:   3'- ggCAGCaa-CGa---UC-CGCUgCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 148463 0.75 0.418895
Target:  5'- cCCGcUCGggGCgagGGGUGcGCGGGGGAgGg -3'
miRNA:   3'- -GGC-AGCaaCGa--UCCGC-UGCCCCCUgC- -5'
21732 3' -58 NC_004812.1 + 127551 0.73 0.499108
Target:  5'- uCgGUCGgcgGCgggGGGCG-CGGGGGAgGg -3'
miRNA:   3'- -GgCAGCaa-CGa--UCCGCuGCCCCCUgC- -5'
21732 3' -58 NC_004812.1 + 711 0.73 0.508453
Target:  5'- uCCGUCGgcgucgGCgccGGCGcggucgccgGCGGGGGugGg -3'
miRNA:   3'- -GGCAGCaa----CGau-CCGC---------UGCCCCCugC- -5'
21732 3' -58 NC_004812.1 + 71806 0.73 0.51787
Target:  5'- gCCGUCGUgGCguggGGGuUGGCGguaGGGGACGu -3'
miRNA:   3'- -GGCAGCAaCGa---UCC-GCUGC---CCCCUGC- -5'
21732 3' -58 NC_004812.1 + 102888 0.72 0.524504
Target:  5'- aCGUCcgUGCgcgGGGCGGCggaccggcgccucgGGGGGGCGg -3'
miRNA:   3'- gGCAGcaACGa--UCCGCUG--------------CCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 34836 0.72 0.527357
Target:  5'- gCCGUCcugGgcGCUcaGGGCGAagagcCGGGGGAUGa -3'
miRNA:   3'- -GGCAG---CaaCGA--UCCGCU-----GCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 26469 0.72 0.546518
Target:  5'- -gGUCGcUUGCUcucuGcGCgGGCGGGGGACGa -3'
miRNA:   3'- ggCAGC-AACGAu---C-CG-CUGCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 137972 0.72 0.546518
Target:  5'- cUCGUCGggGCgGGGuCGGgGGGGGGgGg -3'
miRNA:   3'- -GGCAGCaaCGaUCC-GCUgCCCCCUgC- -5'
21732 3' -58 NC_004812.1 + 64173 0.75 0.418895
Target:  5'- uCCG-CGcgGgaGGGCGGCGGGGGcCGg -3'
miRNA:   3'- -GGCaGCaaCgaUCCGCUGCCCCCuGC- -5'
21732 3' -58 NC_004812.1 + 154839 0.76 0.347013
Target:  5'- cCCGUCGgcGCgGGGCGcggcuGCGaGGGGGCGc -3'
miRNA:   3'- -GGCAGCaaCGaUCCGC-----UGC-CCCCUGC- -5'
21732 3' -58 NC_004812.1 + 83846 0.76 0.347013
Target:  5'- gCCGUCuccgGggGGaGCGGCGGGGGGCGg -3'
miRNA:   3'- -GGCAGcaa-CgaUC-CGCUGCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 149346 1.09 0.002444
Target:  5'- uCCGUCGUUGCUAGGCGACGGGGGACGc -3'
miRNA:   3'- -GGCAGCAACGAUCCGCUGCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 149549 1.09 0.002444
Target:  5'- uCCGUCGUUGCUAGGCGACGGGGGACGc -3'
miRNA:   3'- -GGCAGCAACGAUCCGCUGCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 132935 0.98 0.012866
Target:  5'- uCCGUCGUUGCUAGGCGACcGGGGACGc -3'
miRNA:   3'- -GGCAGCAACGAUCCGCUGcCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 26166 0.79 0.23433
Target:  5'- gUGUCGUUGCcgucagcgucgccGGGCGACGGGGG-CGg -3'
miRNA:   3'- gGCAGCAACGa------------UCCGCUGCCCCCuGC- -5'
21732 3' -58 NC_004812.1 + 19870 0.79 0.23488
Target:  5'- -gGUCGUUgagcgucuccagcgGCgcGGCGGCGGGGGACGc -3'
miRNA:   3'- ggCAGCAA--------------CGauCCGCUGCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 5986 0.77 0.318021
Target:  5'- -aGUCGcggggUGgUAGGCGcCGGGGGGCGa -3'
miRNA:   3'- ggCAGCa----ACgAUCCGCuGCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 6160 0.76 0.339591
Target:  5'- -gGUCGgggGcCUGGGCGGCGGGGGuuGg -3'
miRNA:   3'- ggCAGCaa-C-GAUCCGCUGCCCCCugC- -5'
21732 3' -58 NC_004812.1 + 78608 0.76 0.339591
Target:  5'- cUCGUCGgUGgaAgcGGCGGCGGGGGGCu -3'
miRNA:   3'- -GGCAGCaACgaU--CCGCUGCCCCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.