miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21732 3' -58 NC_004812.1 + 7 0.66 0.875187
Target:  5'- cCCG-CGUUuCcgGGGCGcgcgcguuuuCGGGGGGCGg -3'
miRNA:   3'- -GGCaGCAAcGa-UCCGCu---------GCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 711 0.73 0.508453
Target:  5'- uCCGUCGgcgucgGCgccGGCGcggucgccgGCGGGGGugGg -3'
miRNA:   3'- -GGCAGCaa----CGau-CCGC---------UGCCCCCugC- -5'
21732 3' -58 NC_004812.1 + 1665 0.67 0.835471
Target:  5'- cCCGUUGgccgcgGCgccgcggcccgcccGCGGCGGGGGAUGc -3'
miRNA:   3'- -GGCAGCaa----CGauc-----------CGCUGCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 2042 0.73 0.499108
Target:  5'- uCgGUCGgcgGCgggGGGCG-CGGGGGAgGg -3'
miRNA:   3'- -GgCAGCaa-CGa--UCCGCuGCCCCCUgC- -5'
21732 3' -58 NC_004812.1 + 3084 0.7 0.664378
Target:  5'- gCGUCGguccagGC-GGGCGggGCGGGGGAgGc -3'
miRNA:   3'- gGCAGCaa----CGaUCCGC--UGCCCCCUgC- -5'
21732 3' -58 NC_004812.1 + 3570 0.68 0.760309
Target:  5'- gCCGgCGggcaggcgGCggcGGCGGCGGGcGGGCGc -3'
miRNA:   3'- -GGCaGCaa------CGau-CCGCUGCCC-CCUGC- -5'
21732 3' -58 NC_004812.1 + 4223 0.73 0.51787
Target:  5'- gCGUCGg-GCUcggGGGCGGCGGcGGcGGCGg -3'
miRNA:   3'- gGCAGCaaCGA---UCCGCUGCC-CC-CUGC- -5'
21732 3' -58 NC_004812.1 + 4342 0.68 0.751055
Target:  5'- gCgGUCGUagcggcgGCUcauGGCGACGGcGGcGGCGg -3'
miRNA:   3'- -GgCAGCAa------CGAu--CCGCUGCC-CC-CUGC- -5'
21732 3' -58 NC_004812.1 + 4605 0.68 0.760309
Target:  5'- cCCGaccCGggGCUcGGGUGGCccuuaggggcgGGGGGGCGg -3'
miRNA:   3'- -GGCa--GCaaCGA-UCCGCUG-----------CCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 4920 0.66 0.860827
Target:  5'- gCCGcUCGcUGCggcccgcggAGGCGGCGcuGGaGGGCGg -3'
miRNA:   3'- -GGC-AGCaACGa--------UCCGCUGC--CC-CCUGC- -5'
21732 3' -58 NC_004812.1 + 4959 0.66 0.860827
Target:  5'- gCCGgcgggCGgccgGCggcGGCGAgGcGGGGGCGa -3'
miRNA:   3'- -GGCa----GCaa--CGau-CCGCUgC-CCCCUGC- -5'
21732 3' -58 NC_004812.1 + 4996 0.7 0.674212
Target:  5'- gCCGUgCGccGCaGGGCgGGCGGGGG-CGg -3'
miRNA:   3'- -GGCA-GCaaCGaUCCG-CUGCCCCCuGC- -5'
21732 3' -58 NC_004812.1 + 5329 0.72 0.575652
Target:  5'- uCCGcCGggGCgccgcccgGGGuCGGCGGGGGcGCGg -3'
miRNA:   3'- -GGCaGCaaCGa-------UCC-GCUGCCCCC-UGC- -5'
21732 3' -58 NC_004812.1 + 5986 0.77 0.318021
Target:  5'- -aGUCGcggggUGgUAGGCGcCGGGGGGCGa -3'
miRNA:   3'- ggCAGCa----ACgAUCCGCuGCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 6057 0.67 0.821661
Target:  5'- gCGagGggaagGCggcggAGGCGAaGGGGGGCGa -3'
miRNA:   3'- gGCagCaa---CGa----UCCGCUgCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 6160 0.76 0.339591
Target:  5'- -gGUCGgggGcCUGGGCGGCGGGGGuuGg -3'
miRNA:   3'- ggCAGCaa-C-GAUCCGCUGCCCCCugC- -5'
21732 3' -58 NC_004812.1 + 6586 0.68 0.787399
Target:  5'- gCGUC--UGC-GGGCGaaacagagGCGGGGGugGg -3'
miRNA:   3'- gGCAGcaACGaUCCGC--------UGCCCCCugC- -5'
21732 3' -58 NC_004812.1 + 6819 0.71 0.585446
Target:  5'- gCGUCuGggGCUGGGUGG-GGGGcGGCGg -3'
miRNA:   3'- gGCAG-CaaCGAUCCGCUgCCCC-CUGC- -5'
21732 3' -58 NC_004812.1 + 7427 0.98 0.012866
Target:  5'- uCCGUCGUUGCUAGGCGACcGGGGACGc -3'
miRNA:   3'- -GGCAGCAACGAUCCGCUGcCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 7476 0.66 0.875187
Target:  5'- gCCGUUucgGCgaGGGgGAUGGGGGGgGg -3'
miRNA:   3'- -GGCAGcaaCGa-UCCgCUGCCCCCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.