Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 21751 | 5' | -54.1 | NC_004813.1 | + | 43848 | 0.7 | 0.538882 |
|
Target: 5'- --cCCGgcgCGCCAGACCGCugUCaCACc -3' miRNA: 3'- auuGGCa--GUGGUUUGGCGugGGaGUG- -5' |
|||||||
| 21751 | 5' | -54.1 | NC_004813.1 | + | 45061 | 0.7 | 0.505653 |
|
Target: 5'- --cCUGUCcaucgauGCCGccAGCCGCACCCUgACg -3' miRNA: 3'- auuGGCAG-------UGGU--UUGGCGUGGGAgUG- -5' |
|||||||
| 21751 | 5' | -54.1 | NC_004813.1 | + | 45264 | 0.69 | 0.593879 |
|
Target: 5'- -uGCCGUCACUgcGCCGuCGCCUguucCGCu -3' miRNA: 3'- auUGGCAGUGGuuUGGC-GUGGGa---GUG- -5' |
|||||||
| 21751 | 5' | -54.1 | NC_004813.1 | + | 47734 | 0.68 | 0.627344 |
|
Target: 5'- -cGCCaGUCGCCAcuGCCGgaGCCUUCAUa -3' miRNA: 3'- auUGG-CAGUGGUu-UGGCg-UGGGAGUG- -5' |
|||||||
| 21751 | 5' | -54.1 | NC_004813.1 | + | 49087 | 0.66 | 0.779182 |
|
Target: 5'- --cCCGUCACCAAACCugACCUgCAa -3' miRNA: 3'- auuGGCAGUGGUUUGGcgUGGGaGUg -5' |
|||||||
| 21751 | 5' | -54.1 | NC_004813.1 | + | 50111 | 0.68 | 0.627344 |
|
Target: 5'- aAGCCGUUGCCGcaugcGACCGCguaaACCgUCAg -3' miRNA: 3'- aUUGGCAGUGGU-----UUGGCG----UGGgAGUg -5' |
|||||||
| 21751 | 5' | -54.1 | NC_004813.1 | + | 52948 | 0.68 | 0.627344 |
|
Target: 5'- aAGCCGUUGCCGcaggcGACCGCguaaACCgUCAg -3' miRNA: 3'- aUUGGCAGUGGU-----UUGGCG----UGGgAGUg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home